Homologs of Shew_3423 from Shewanella loihica PV-4

anti-RNA polymerase sigma 70 factor (RefSeq)
SEED: Regulator of sigma D
KEGG: regulator of sigma D

61 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) insig. 100 100
o Shewanella amazonensis SB2B Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) insig. 74 99
o Shewanella sp. ANA-3 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) cofit 72 99
o Shewanella oneidensis MR-1 SO0433 rsd regulator of sigma D (NCBI ptt file) sig. 70 99
o Alteromonas macleodii MIT1002 MIT1002_03798 Regulator of sigma D insig. 39 98
o Marinobacter adhaerens HP15 HP15_221 anti-RNA polymerase sigma 70 factor strong 38 100
o Serratia liquefaciens MT49 IAI46_01325 Rsd/AlgQ family anti-sigma factor insig. 38 96
o Rahnella sp. WP5 EX31_RS16820 Rsd/AlgQ family anti-sigma factor cofit 40 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_01710 Rsd/AlgQ family anti-sigma factor insig. 38 96
o Pseudomonas segetis P6 ACVTMO_RS22410 Rsd/AlgQ family anti-sigma factor strong 40 99
o Pseudomonas sp. S08-1 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD cofit 37 99
o Pseudomonas syringae pv. syringae B728a Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ insig. 37 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ insig. 37 99
o Pseudomonas aeruginosa MRSN321 DY961_RS12155 rsd;go_process=regulation sigma D regulator cofit 36 99
o Pseudomonas aeruginosa PA14 IKLFDK_27180 Alginate regulatory protein AlgQ sig. 36 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS49965 rsd;go_process=regulation sigma D regulator strong 36 99
o Pseudomonas sp. DMC3 GFF353 Regulator of sigma D cofit 38 100
o Pseudomonas stutzeri RCH2 Psest_3743 Regulator of sigma D sig. 37 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_861 Regulator of sigma D insig. 36 99
o Pseudomonas sp. BP01 JOY50_RS18725 Rsd/AlgQ family anti-sigma factor insig. 39 99
o Pantoea sp. MT58 IAI47_18080 Rsd/AlgQ family anti-sigma factor insig. 36 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS18325 Rsd/AlgQ family anti-sigma factor cofit 36 96
o Klebsiella michiganensis M5al BWI76_RS01560 Rsd/AlgQ family anti-sigma factor strong 37 98
o Pseudomonas putida KT2440 PP_0191 Transcriptional regulatory protein AlgQ strong 36 99
o Pseudomonas protegens RBAN4 FABNJH_30250 rsd sigma D regulator insig. 36 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2190 Regulator of sigma D cofit 36 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4197 Regulator of sigma D insig. 36 94
o Pseudomonas fluorescens FW300-N2E3 AO353_08965 transcriptional regulator sig. 35 99
o Pseudomonas fluorescens FW300-N2C3 AO356_12810 transcriptional regulator sig. 37 99
o Pseudomonas sp. RS175 PFR28_04361 Regulator of sigma D sig. 37 99
o Klebsiella pneumoniae MKP103 KDGMDA_10045 sigma D regulator insig. 35 94
o Klebsiella pneumoniae MRSN742743 KFA93_RS24340 Rsd/AlgQ family anti-sigma factor insig. 35 94
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4435 Regulator of sigma D sig. 37 99
o Escherichia coli BL21 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit insig. 35 94
o Escherichia coli ECOR27 NOLOHH_05515 rsd sigma D regulator insig. 35 94
o Escherichia coli ECOR38 HEPCGN_12005 rsd sigma D regulator sig. 35 94
o Escherichia coli ECRC100 OKFHMN_13370 rsd sigma D regulator cofit 35 94
o Escherichia coli ECRC101 MCAODC_03870 rsd sigma D regulator insig. 35 94
o Escherichia coli ECRC102 NIAGMN_11120 rsd sigma D regulator cofit 35 94
o Escherichia coli ECRC62 BNILDI_06010 rsd sigma D regulator insig. 35 94
o Escherichia coli ECRC98 JDDGAC_16995 rsd sigma D regulator insig. 35 94
o Escherichia coli ECRC99 KEDOAH_14790 rsd sigma D regulator no data 35 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04055 Regulator of sigma D insig. 35 94
o Escherichia coli BW25113 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) sig. 35 94
o Escherichia fergusonii Becca EFB2_04616 Regulator of sigma D cofit 34 94
o Escherichia coli Nissle 1917 ECOLIN_RS23045 sigma D regulator insig. 34 94
o Enterobacter sp. TBS_079 MPMX20_00218 Regulator of sigma D sig. 34 96
o Enterobacter asburiae PDN3 EX28DRAFT_4537 Regulator of sigma D insig. 34 96
o Pseudomonas sp. SVBP6 COO64_RS01170 Rsd/AlgQ family anti-sigma factor insig. 34 99
o Pectobacterium carotovorum WPP14 HER17_RS20375 Rsd/AlgQ family anti-sigma factor cofit 34 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05639 Regulator of sigma D insig. 34 99
o Pseudomonas orientalis W4I3 QF045_RS01865 sigma D regulator insig. 35 99
o Erwinia amylovora T8 OLJFJH_06745 sigma D regulator insig. 35 96
o Pseudomonas simiae WCS417 PS417_27505 transcriptional regulator strong 33 99
o Pseudomonas fluorescens SBW25 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor insig. 32 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29185 Rsd/AlgQ family anti-sigma factor strong 32 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_10890 rsd sigma D regulator cofit 33 96
o Erwinia tracheiphila SCR3 LU632_RS00975 Rsd/AlgQ family anti-sigma factor insig. 33 96
  Dickeya dadantii 3937 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor insig. 32 96
  Dickeya dianthicola ME23 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor insig. 32 96
  Dickeya dianthicola 67-19 HGI48_RS01175 sigma D regulator insig. 32 96