Conservation of cofitness between Xcc-8004.3041.1 and Xcc-8004.4848.1 in Xanthomonas campestris pv. campestris strain 8004

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3041.1 Dna binding response regulator PrrA (RegA) 1.0 Xcc-8004.4848.1 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.70 9
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_10900 two-component system response regulator 0.68 OKGIIK_16505 putA bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS10115 response regulator transcription factor 0.69 ABZR86_RS12940 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA — —
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS04040 response regulator transcription factor 0.67 LRK54_RS07135 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA — —
Rhodanobacter denitrificans MT42 0.46 LRK55_RS03810 response regulator transcription factor 0.67 LRK55_RS06875 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA low > 63
Paraburkholderia graminis OAS925 0.45 ABIE53_000420 two-component system response regulator RegA 0.50 ABIE53_000244 RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS13000 chemotaxis protein CheY 0.51 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 78
Shewanella oneidensis MR-1 0.41 SO4172 DNA-binding response regulator (NCBI ptt file) 0.50 SO3774 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) (from data) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_3707 response regulator receiver protein (RefSeq) 0.50 Shewana3_0819 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 73
Pseudomonas stutzeri RCH2 0.41 Psest_3338 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 0.50 Psest_3079 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 67
Shewanella loihica PV-4 0.41 Shew_3342 two component Fis family transcriptional regulator (RefSeq) 0.50 Shew_0615 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1932 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 0.50 B158DRAFT_0840 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 40
Shewanella amazonensis SB2B 0.39 Sama_3186 response regulator receiver protein (RefSeq) 0.50 Sama_2676 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 62
Dinoroseobacter shibae DFL-12 0.38 Dshi_3430 two component transcriptional regulator, Fis family (RefSeq) 0.43 Dshi_2311 delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.37 PGA1_c35390 photosynthetic apparatus regulatory protein RegA 0.42 PGA1_c11750 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) — —
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01845 two-component response regulator protein 0.44 CCNA_00846 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01845 two-component response regulator protein 0.44 CCNA_00846 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS04475 response regulator transcription factor 0.44 A4249_RS13050 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA low > 48
Rhizobium sp. OAE497 0.36 ABIE40_RS19505 ActR/PrrA/RegA family redox response regulator transcription factor 0.47 ABIE40_RS23445 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 107
Azospirillum sp. SherDot2 0.36 MPMX19_06181 Photosynthetic apparatus regulatory protein RegA 0.47 MPMX19_05932 Bifunctional protein PutA — —
Sinorhizobium meliloti 1021 0.36 SMc02584 transcriptional regulator 0.46 SMc02181 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase — —
Azospirillum brasilense Sp245 0.36 AZOBR_RS23150 chemotaxis protein CheY 0.47 AZOBR_RS23695 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 97
Agrobacterium fabrum C58 0.35 Atu0050 two component response regulator 0.47 Atu4157 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 89
Lysobacter sp. OAE881 0.35 ABIE51_RS09795 response regulator transcription factor 0.78 ABIE51_RS19215 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_1560 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 0.46 Ga0059261_3926 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 68
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3147 Dna binding response regulator PrrA (RegA) 0.48 Ac3H11_2850 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) — —
Marinobacter adhaerens HP15 0.34 HP15_3981 two component transcriptional regulator, Fis family 0.44 HP15_2688 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 73
Bosea sp. OAE506 0.34 ABIE41_RS03875 ActR/PrrA/RegA family redox response regulator transcription factor 0.46 ABIE41_RS07915 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA low > 77
Variovorax sp. SCN45 0.34 GFF5672 Dna binding response regulator PrrA (RegA) 0.49 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) low > 127
Variovorax sp. OAS795 0.34 ABID97_RS07610 response regulator transcription factor 0.42 ABID97_RS00240 L-glutamate gamma-semialdehyde dehydrogenase low > 91
Rhodopseudomonas palustris CGA009 0.34 TX73_002960 ActR/PrrA/RegA family redox response regulator transcription factor 0.46 TX73_008115 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA low > 86

Not shown: 23 genomes with orthologs for Xcc-8004.3041.1 only; 8 genomes with orthologs for Xcc-8004.4848.1 only