| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_019170 | | LLM class flavin-dependent oxidoreductase | 1.0 | TX73_015515 | | LysR family transcriptional regulator | 0.40 | 11 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS03105 | | LLM class flavin-dependent oxidoreductase | 0.17 | DDA3937_RS18355 | | transcriptional activator NhaR | — | — |
| Bosea sp. OAE506 | 0.42 | ABIE41_RS08380 | | LLM class flavin-dependent oxidoreductase | 0.58 | ABIE41_RS20745 | | LysR family transcriptional regulator | low | > 77 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS03280 | | luciferase-like monooxygenase | 0.13 | HGI48_RS07865 | | LysR family transcriptional regulator | low | > 71 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS03275 | | LLM class flavin-dependent oxidoreductase | 0.13 | DZA65_RS08455 | | LysR family transcriptional regulator | low | > 75 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_01985 | | luciferase-like monooxygenase | 0.18 | IAI46_03090 | | transcriptional activator NhaR | low | > 86 |
| Rahnella sp. WP5 | 0.41 | EX31_RS08505 | | luciferase-like monooxygenase | 0.19 | EX31_RS03885 | | transcriptional activator NhaR | low | > 89 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS07630 | | alkane 1-monooxygenase | 0.26 | BPHYT_RS10255 | | LysR family transcriptional regulator | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS23415 | | LLM class flavin-dependent oxidoreductase | 0.24 | QEN71_RS11585 | | transcriptional activator NhaR | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_06466 | | luciferase family oxidoreductase, group 1 | 0.24 | H281DRAFT_01823 | | transcriptional regulator, LysR family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_001755 | | luciferase family oxidoreductase group 1 | 0.24 | ABIE53_004867 | | LysR family transcriptional activator of nhaA | low | > 113 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS18170 | | LLM class flavin-dependent oxidoreductase | 0.17 | HER17_RS02855 | | transcriptional activator NhaR | low | > 75 |
| Pseudomonas putida KT2440 | 0.38 | PP_0088 | | putative alkanal monooxygenase | 0.23 | PP_2444 | | Transcriptional regulator, LysR family | low | > 96 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF1508 | | Luciferase-like monooxygenase (EC 1.14.-.-) | 0.18 | GFF1120 | | Transcriptional activator NhaR | low | > 78 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_04064 | | hypothetical protein | 0.18 | MPMX20_00723 | | Transcriptional activator protein NhaR | low | > 85 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_10940 | | hypothetical protein | 0.21 | AO356_01805 | | LysR family transcriptional regulator | low | > 104 |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS18895 | | alkane 1-monooxygenase | 0.37 | HSERO_RS11605 | | LysR family transcriptional regulator | low | > 78 |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_09965 | yhbW | luciferase-like monooxygenase | 0.18 | NOLOHH_03355 | nhaR | transcriptional activator NhaR | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_00540 | | hypothetical protein | 0.18 | OHPLBJKB_03641 | | Transcriptional activator protein NhaR | low | > 73 |
| Escherichia coli BW25113 | 0.38 | b3160 | yhbW | predicted enzyme (NCBI) | 0.18 | b0020 | nhaR | DNA-binding transcriptional activator (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_09985 | yhbW | luciferase-like monooxygenase | 0.18 | KEDOAH_17130 | nhaR | transcriptional activator NhaR | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_18165 | yhbW | luciferase-like monooxygenase | 0.18 | OKFHMN_11025 | nhaR | transcriptional activator NhaR | low | > 80 |
| Escherichia fergusonii Becca | 0.38 | EFB2_00663 | | hypothetical protein | 0.18 | EFB2_04023 | | Transcriptional activator protein NhaR | low | > 86 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_21790 | yhbW | luciferase-like monooxygenase | 0.18 | JDDGAC_14620 | nhaR | transcriptional activator NhaR | low | > 86 |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_17040 | yhbW | luciferase-like monooxygenase | 0.18 | HEPCGN_09010 | nhaR | transcriptional activator NhaR | low | > 87 |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS18150 | | luciferase-like monooxygenase | 0.18 | ECOLIN_RS00110 | | transcriptional activator NhaR | low | > 55 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_10735 | | hypothetical protein | 0.23 | AO353_20115 | | LysR family transcriptional regulator | low | > 101 |
| Escherichia coli ECRC101 | 0.38 | MCAODC_08685 | yhbW | luciferase-like monooxygenase | 0.18 | MCAODC_01540 | nhaR | transcriptional activator NhaR | low | > 87 |
| Escherichia coli ECRC62 | 0.38 | BNILDI_01565 | yhbW | luciferase-like monooxygenase | 0.18 | BNILDI_08250 | nhaR | transcriptional activator NhaR | low | > 75 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_3209 | | luciferase family oxidoreductase, group 1 | 0.17 | EX28DRAFT_3629 | | Transcriptional regulator | low | > 76 |
| Escherichia coli ECRC102 | 0.37 | NIAGMN_15925 | yhbW | luciferase-like monooxygenase | 0.18 | NIAGMN_08875 | nhaR | transcriptional activator NhaR | — | — |
| Escherichia coli BL21 | 0.37 | ECD_03027 | | putative luciferase-like monooxygenase | 0.18 | ECD_00019 | | transcriptional activator of nhaA | low | > 61 |
| Pseudomonas simiae WCS417 | 0.37 | PS417_00210 | | hypothetical protein | 0.24 | PS417_10445 | | LysR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS00205 | | LLM class flavin-dependent oxidoreductase | 0.24 | PFLU_RS10530 | | transcriptional activator NhaR | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS00205 | | LLM class flavin-dependent oxidoreductase | 0.24 | PFLU_RS10530 | | transcriptional activator NhaR | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.37 | Pf6N2E2_4053 | | Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases | 0.21 | Pf6N2E2_2228 | | Transcriptional regulator, LysR family | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_571 | | Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases | 0.22 | PfGW456L13_2543 | | Transcriptional regulator, LysR family | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_1836 | | Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases | 0.22 | Pf1N1B4_3936 | | Transcriptional regulator, LysR family | low | > 87 |
| Pantoea sp. MT58 | 0.37 | IAI47_16975 | | luciferase-like monooxygenase | 0.19 | IAI47_16160 | | transcriptional activator NhaR | low | > 76 |
| Pseudomonas sp. RS175 | 0.37 | PFR28_04710 | | hypothetical protein | 0.21 | PFR28_01216 | | Transcriptional activator protein NhaR | low | > 88 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF4577 | | Bacterial luciferase family protein | 0.21 | GFF1910 | | Cys regulon transcriptional activator CysB | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.36 | Ac3H11_4052 | | Bacterial luciferase family protein | 0.26 | Ac3H11_815 | | Transcriptional regulator, LysR family | low | > 79 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS24980 | | LLM class flavin-dependent oxidoreductase | 0.18 | BWI76_RS04320 | | transcriptional activator NhaR | low | > 92 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS15705 | | LLM class flavin-dependent oxidoreductase | 0.62 | ABIE40_RS29265 | | LysR family transcriptional regulator | low | > 107 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0039 | | luciferase | 0.23 | Psyr_2422 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0039 | | luciferase | 0.23 | Psyr_2422 | | transcriptional regulator, LysR family | low | > 86 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_3090 | | luciferase family protein (RefSeq) | 0.17 | Shewana3_3036 | nhaR | transcriptional activator NhaR (RefSeq) | low | > 73 |
| Dechlorosoma suillum PS | 0.34 | Dsui_1879 | | luciferase family oxidoreductase, group 1 | 0.25 | Dsui_1151 | | transcriptional regulator | low | > 51 |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c19970 | | luciferase family oxidoreductase, group 1 | 0.66 | PGA1_78p00220 | | transcriptional regulatory protein, LysR family | — | — |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_03895 | | Alkanal monooxygenase alpha chain | 0.19 | MIT1002_03553 | | Na(+)/H(+) antiporter regulatory protein | low | > 70 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_4079 | | flavin dependent oxidoreductase | 0.44 | HP15_1621 | | transcriptional regulator, LysR family protein | low | > 73 |
Not shown: 31 genomes with orthologs for TX73_019170 only; 6 genomes with orthologs for TX73_015515 only