| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS27670 | | LysR family transcriptional regulator | 1.0 | RR42_RS27680 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.44 | 7 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS20090 | | LysR family transcriptional regulator | 0.47 | QEN71_RS37925 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_004109 | | LysR family transcriptional regulator for bpeEF and oprC | 0.49 | ABIE53_004107 | | multidrug efflux system membrane fusion protein | 0.27 | 44 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS22500 | | transcriptional regulator | 0.49 | BPHYT_RS22510 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.24 | 4 |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS18390 | | LysR family transcriptional regulator | 0.54 | RALBFv3_RS18380 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.85 | 2 |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS20740 | | LysR family transcriptional regulator | 0.54 | UW163_RS20750 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_03187 | | transcriptional regulator, LysR family | 0.48 | H281DRAFT_03189 | | membrane fusion protein, multidrug efflux system | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS22475 | | LysR family transcriptional regulator | 0.54 | RS_RS22485 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.92 | 2 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS05160 | | LysR family transcriptional regulator | 0.54 | RPSI07_RS05170 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS19415 | | LysR family transcriptional regulator | 0.53 | ABZR87_RS19405 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_02959 | | HTH-type transcriptional regulator DmlR | 0.48 | MPMX19_02967 | | Efflux pump periplasmic linker BepF | low | > 112 |
| Dechlorosoma suillum PS | 0.45 | Dsui_2023 | | transcriptional regulator | 0.47 | Dsui_2025 | | RND family efflux transporter, MFP subunit | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS01575 | | transcriptional regulator | 0.46 | HSERO_RS01565 | | hemolysin secretion protein D | low | > 78 |
| Variovorax sp. SCN45 | 0.43 | GFF432 | | Probable transcription regulator protein of MDR efflux pump cluster | 0.47 | GFF430 | | RND efflux system, membrane fusion protein | low | > 127 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS17365 | | LysR family transcriptional regulator | 0.46 | ABID97_RS17355 | | efflux RND transporter periplasmic adaptor subunit | low | > 91 |
| Acinetobacter baumannii LAC-4 | 0.42 | RR41_RS06075 | | multidrug efflux transcriptional repressor AdeL | 0.49 | RR41_RS06070 | | multidrug efflux RND transporter periplasmic adaptor subunit AdeF | low | > 55 |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_348 | | Transcriptional regulator, LysR family | 0.41 | Pf6N2E2_947 | | Multidrug efflux membrane fusion protein MexE | low | > 103 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_18470 | | Transcriptional regulator, LysR family | 0.40 | OH686_01010 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_261 | | Transcriptional regulator, LysR family | 0.47 | Ac3H11_259 | | Probable Co/Zn/Cd efflux system membrane fusion protein | 0.43 | 2 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_22390 | | LysR family transcriptional regulator | 0.41 | AO356_27600 | | RND transporter MFP subunit | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3003 | | Transcriptional regulator | 0.39 | Psest_2145 | | RND family efflux transporter, MFP subunit | low | > 67 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_02560 | | HTH-type transcriptional regulator PgrR | 0.41 | PFR28_01729 | | Efflux pump periplasmic linker BepF | low | > 88 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_0569 | | Transcriptional regulator | 0.34 | EX28DRAFT_1473 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Pseudomonas aeruginosa PA14 | 0.41 | IKLFDK_21520 | | LysR family transcriptional regulator | 0.39 | IKLFDK_12245 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 100 |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS09765 | | LysR family transcriptional regulator | 0.35 | ABZR86_RS15405 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Pseudomonas sp. DMC3 | 0.40 | GFF2976 | | HTH-type transcriptional regulator PgrR | 0.43 | GFF2877 | | Efflux pump periplasmic linker BepF | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.4707.1 | | Transcriptional regulator, LysR family | 0.34 | Xcc-8004.3478.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS14890 | | LysR family transcriptional regulator | 0.40 | ABIE40_RS14880 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS18480 | | LysR family transcriptional regulator | 0.33 | BWI76_RS12950 | | acriflavin resistance protein AcrA | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.40 | KDGMDA_25725 | | LysR family transcriptional regulator | 0.33 | KDGMDA_02525 | | multidrug efflux RND transporter periplasmic adaptor subunit OqxA | low | > 95 |
| Xanthobacter sp. DMC5 | 0.39 | GFF2261 | | HTH-type transcriptional regulator DmlR | 0.39 | GFF2263 | | Efflux pump periplasmic linker BepF | — | — |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS10295 | | LysR substrate-binding domain-containing protein | 0.35 | ABIE51_RS01055 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_02362 | | HTH-type transcriptional regulator PgrR | 0.33 | MPMX20_01154 | | Multidrug resistance protein MdtE | low | > 85 |
| Agrobacterium fabrum C58 | 0.38 | Atu2480 | | transcriptional regulator, LysR family | 0.40 | Atu2482 | | HlyD family secretion protein | 0.76 | 1 |
| Pantoea sp. MT58 | 0.37 | IAI47_21090 | | LysR family transcriptional regulator | 0.35 | IAI47_10305 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.37 | SMc01092 | | transcriptional regulator | 0.38 | SMc01094 | | multidrug efflux system transmembrane protein | low | > 103 |
| Pantoea agglomerans CFBP13505 P0401 | 0.32 | PagCFBP13505_RS20825 | | LysR family transcriptional regulator | 0.35 | PagCFBP13505_RS05830 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Sphingobium sp. HT1-2 | 0.26 | GFF4706 | | Transcriptional regulator, LysR family | 0.29 | GFF2976 | | RND efflux system, membrane fusion protein | low | > 95 |
Not shown: 3 genomes with orthologs for RR42_RS27670 only; 34 genomes with orthologs for RR42_RS27680 only