Conservation of cofitness between RR42_RS10910 and RR42_RS19520 in Cupriavidus basilensis FW507-4G11

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS10910 aminodeoxychorismate lyase 1.0 RR42_RS19520 general secretion pathway protein GspD 0.84 1
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS12480 endolytic transglycosylase MltG 0.55 ABZR87_RS03450 type II secretion system secretin GspD low > 80
Ralstonia solanacearum PSI07 0.70 RPSI07_RS16445 endolytic transglycosylase MltG 0.55 RPSI07_RS09520 type II secretion system protein GspD low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS09000 endolytic transglycosylase MltG 0.55 RS_RS15640 type II secretion system protein GspD low > 80
Ralstonia solanacearum UW163 0.69 UW163_RS14340 endolytic transglycosylase MltG 0.55 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS01030 endolytic transglycosylase MltG 0.55 RALBFv3_RS07740 type II secretion system protein GspD low > 76
Paraburkholderia graminis OAS925 0.62 ABIE53_002162 UPF0755 protein 0.19 ABIE53_000295 general secretion pathway protein D low > 113
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_00927 UPF0755 protein 0.19 H281DRAFT_02356 general secretion pathway protein D low > 103
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS09620 aminodeoxychorismate lyase 0.19 BPHYT_RS19595 general secretion pathway protein GspD low > 109
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS21820 endolytic transglycosylase MltG 0.20 QEN71_RS29510 type II secretion system secretin GspD low > 153
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2492 FIG004453: protein YceG like 0.37 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 79
Variovorax sp. SCN45 0.50 GFF30 Murein endolytic transglycosylase MltG 0.36 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 127
Variovorax sp. OAS795 0.48 ABID97_RS15980 endolytic transglycosylase MltG 0.35 ABID97_RS06950 type II secretion system secretin GspD low > 91
Pseudomonas stutzeri RCH2 0.44 Psest_1692 conserved hypothetical protein, YceG family 0.18 Psest_2577 general secretion pathway protein D low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF4661 FIG004453: protein YceG like 0.38 GFF1390 General secretion pathway protein D low > 90
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3991.1 FIG004453: protein YceG like 0.17 Xcc-8004.942.1 hypothetical protein low > 74
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS06145 endolytic transglycosylase MltG 0.12 ABZR86_RS13065 type II secretion system secretin GspD 0.41 51
Shewanella amazonensis SB2B 0.40 Sama_2044 hypothetical protein (RefSeq) 0.17 Sama_0169 type II and III secretion system protein (RefSeq) low > 62
Pseudomonas sp. S08-1 0.39 OH686_22160 Murein endolytic transglycosylase MltG 0.21 OH686_11840 type II secretion system protein D low > 80
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS23035 endolytic transglycosylase MltG 0.31 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25 0.39 PFLU_RS23035 endolytic transglycosylase MltG 0.31 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas sp. RS175 0.39 PFR28_03006 Endolytic murein transglycosylase 0.31 PFR28_01750 Secretin XcpQ low > 88
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5956 FIG004453: protein YceG like 0.32 Pf6N2E2_651 General secretion pathway protein D low > 103
Shewanella loihica PV-4 0.38 Shew_1578 aminodeoxychorismate lyase (RefSeq) 0.16 Shew_3619 general secretion pathway protein D (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_2109 FIG004453: protein YceG like 0.16 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_01345 aminodeoxychorismate lyase 0.16 AO353_12545 type II secretion system protein GspD low > 101
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_10075 endolytic transglycosylase MltG 0.17 CSW01_13790 type II secretion system protein GspD — —
Shewanella sp. ANA-3 0.37 Shewana3_1765 aminodeoxychorismate lyase (RefSeq) 0.16 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO2614 conserved hypothetical protein TIGR00247 (NCBI ptt file) 0.16 SO0166 gspD general secretion pathway protein D (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.33 MIT1002_01737 putative aminodeoxychorismate lyase 0.18 MIT1002_03976 Pullulanase secretion envelope PulD low > 70
Enterobacter asburiae PDN3 0.32 EX28DRAFT_1832 conserved hypothetical protein, YceG family 0.18 EX28DRAFT_2079 type II secretion system protein D low > 76
Erwinia tracheiphila SCR3 0.32 LU632_RS14800 yceG cell division protein YceG 0.16 LU632_RS25230 gspD type II secretion system secretin GspD low > 74
Escherichia coli ECRC101 0.31 MCAODC_22915 yceG cell division protein YceG 0.15 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC102 0.31 NIAGMN_24275 yceG cell division protein YceG 0.15 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli ECRC100 0.31 OKFHMN_03555 yceG cell division protein YceG 0.15 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC98 0.31 JDDGAC_07215 yceG cell division protein YceG 0.15 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECOR27 0.31 NOLOHH_21085 yceG cell division protein YceG 0.19 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_02569 Endolytic murein transglycosylase 0.19 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli BW25113 0.31 b1097 yceG predicted aminodeoxychorismate lyase (NCBI) 0.18 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Escherichia fergusonii Becca 0.31 EFB2_02878 Endolytic murein transglycosylase 0.19 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli BL21 0.31 ECD_01093 septation protein, ampicillin sensitivity 0.19 ECD_02838 putative type II secretion protein GspD low > 61
Escherichia coli ECOR38 0.31 HEPCGN_23925 yceG cell division protein YceG 0.19 HEPCGN_18050 gspD general secretion pathway protein D low > 87
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_01751 aminodeoxychorismate lyase 0.20 CCNA_00172 type II secretion pathway protein D low > 67
Caulobacter crescentus NA1000 0.28 CCNA_01751 aminodeoxychorismate lyase 0.20 CCNA_00172 type II secretion pathway protein D low > 66
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0361 conserved hypothetical protein, YceG family 0.18 Ga0059261_3945 type II secretion system protein D low > 68

Not shown: 35 genomes with orthologs for RR42_RS10910 only; 6 genomes with orthologs for RR42_RS19520 only