Conservation of cofitness between RR42_RS32990 and RR42_RS18270 in Cupriavidus basilensis FW507-4G11

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS32990 1-aminocyclopropane-1-carboxylate deaminase 1.0 RR42_RS18270 murein transglycosylase 0.51 14
Paraburkholderia sabiae LMG 24235 0.89 QEN71_RS09955 1-aminocyclopropane-1-carboxylate deaminase 0.54 QEN71_RS27525 MltA domain-containing protein — —
Variovorax sp. SCN45 0.88 GFF5505 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.29 GFF5451 Membrane-bound lytic murein transglycosylase A low > 127
Ralstonia solanacearum PSI07 0.87 RPSI07_RS02310 1-aminocyclopropane-1-carboxylate deaminase 0.65 RPSI07_RS10780 murein transglycosylase low > 81
Ralstonia sp. UNC404CL21Col 0.87 ABZR87_RS13980 1-aminocyclopropane-1-carboxylate deaminase 0.63 ABZR87_RS02115 murein transglycosylase A low > 80
Burkholderia phytofirmans PsJN 0.87 BPHYT_RS26815 1-aminocyclopropane-1-carboxylate deaminase 0.54 BPHYT_RS17365 transglycosylase — —
Paraburkholderia graminis OAS925 0.87 ABIE53_005908 1-aminocyclopropane-1-carboxylate deaminase 0.53 ABIE53_003635 membrane-bound lytic murein transglycosylase A low > 113
Paraburkholderia bryophila 376MFSha3.1 0.87 H281DRAFT_02886 1-aminocyclopropane-1-carboxylate deaminase 0.51 H281DRAFT_05719 membrane-bound lytic murein transglycosylase A — —
Ralstonia solanacearum IBSBF1503 0.86 RALBFv3_RS20430 1-aminocyclopropane-1-carboxylate deaminase 0.64 RALBFv3_RS06460 murein transglycosylase low > 76
Ralstonia solanacearum GMI1000 0.86 RS_RS20210 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein 0.65 RS_RS14405 murein transglycosylase low > 80
Ralstonia solanacearum UW163 0.86 UW163_RS18745 1-aminocyclopropane-1-carboxylate deaminase 0.64 UW163_RS07165 murein transglycosylase — —
Variovorax sp. OAS795 0.86 ABID97_RS01750 1-aminocyclopropane-1-carboxylate deaminase 0.29 ABID97_RS01975 MltA domain-containing protein low > 91
Acidovorax sp. GW101-3H11 0.85 Ac3H11_846 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.30 Ac3H11_1203 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_1819 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.31 Pf6N2E2_4647 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_29420 1-aminocyclopropane-1-carboxylate deaminase 0.31 AO356_13645 transglycosylase low > 104
Pseudomonas sp. RS175 0.84 PFR28_00042 1-aminocyclopropane-1-carboxylate deaminase 0.32 PFR28_04195 Membrane-bound lytic murein transglycosylase A low > 88
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_1801 1-aminocyclopropane-1-carboxylate deaminase 0.30 Psyr_0880 MltA:3D low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_1801 1-aminocyclopropane-1-carboxylate deaminase 0.30 Psyr_0880 MltA:3D low > 86
Bosea sp. OAE506 0.74 ABIE41_RS18100 1-aminocyclopropane-1-carboxylate deaminase 0.23 ABIE41_RS04620 MltA domain-containing protein low > 77
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_2911 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.30 Pf1N1B4_2391 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) low > 87
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS16005 1-aminocyclopropane-1-carboxylate deaminase 0.47 HSERO_RS19415 membrane protein low > 78
Phaeobacter inhibens DSM 17395 0.36 PGA1_c25520 D-cysteine desulfhydrase DcyD 0.31 PGA1_c35210 putative membrane-bound lytic murein transglycosylase A low > 62
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_02112 D-cysteine desulfhydrase 0.20 CCNA_03856 membrane-bound lytic murein transglycosylase A low > 67
Caulobacter crescentus NA1000 0.34 CCNA_02112 D-cysteine desulfhydrase 0.20 CCNA_03856 membrane-bound lytic murein transglycosylase A low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15740 D-cysteine desulfhydrase 0.18 A4249_RS13490 MltA domain-containing protein low > 48
Pseudomonas simiae WCS417 0.30 PS417_01110 cysteine desulfhydrase 0.32 PS417_26475 transglycosylase 0.17 17
Escherichia coli ECRC102 0.29 NIAGMN_02255 dcyD D-cysteine desulfhydrase 0.19 NIAGMN_17855 mltA murein transglycosylase A — —
Escherichia coli ECRC100 0.29 OKFHMN_25795 dcyD D-cysteine desulfhydrase 0.19 OKFHMN_20085 mltA murein transglycosylase A low > 80
Escherichia coli ECRC101 0.29 MCAODC_19595 dcyD D-cysteine desulfhydrase 0.19 MCAODC_10610 mltA murein transglycosylase A low > 87
Escherichia coli ECRC99 0.29 KEDOAH_02295 dcyD D-cysteine desulfhydrase 0.19 KEDOAH_08045 mltA murein transglycosylase A — —
Escherichia coli ECRC98 0.29 JDDGAC_00385 dcyD D-cysteine desulfhydrase 0.19 JDDGAC_23750 mltA murein transglycosylase A low > 86
Escherichia coli ECRC62 0.29 BNILDI_15205 dcyD D-cysteine desulfhydrase 0.19 BNILDI_10475 mltA murein transglycosylase A low > 75
Escherichia coli BW25113 0.29 b1919 yedO putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) 0.19 b2813 mltA membrane-bound lytic murein transglycosylase A (NCBI) low > 76
Escherichia coli ECOR38 0.29 HEPCGN_04150 dcyD D-cysteine desulfhydrase 0.19 HEPCGN_19340 mltA murein transglycosylase A low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01810 D-cysteine desulfhydrase 0.19 OHPLBJKB_00918 Membrane-bound lytic murein transglycosylase A low > 73
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS01220 D-cysteine desulfhydrase 0.32 PFLU_RS28130 murein transglycosylase A low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS01220 D-cysteine desulfhydrase 0.32 PFLU_RS28130 murein transglycosylase A low > 109
Escherichia coli Nissle 1917 0.29 ECOLIN_RS10930 D-cysteine desulfhydrase 0.19 ECOLIN_RS15675 murein transglycosylase A low > 55
Escherichia coli ECOR27 0.29 NOLOHH_16415 dcyD D-cysteine desulfhydrase 0.19 NOLOHH_11970 mltA murein transglycosylase A low > 75
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_443 D-cysteine desulfhydrase (EC 4.4.1.15) 0.30 PfGW456L13_1057 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) low > 87
Klebsiella michiganensis M5al 0.29 BWI76_RS18360 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein 0.18 BWI76_RS22980 murein transglycosylase A low > 92
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_11680 cysteine desulfhydrase 0.31 AO353_07985 transglycosylase low > 101
Enterobacter asburiae PDN3 0.28 EX28DRAFT_0628 D-cysteine desulfhydrase (EC 4.4.1.15) 0.19 EX28DRAFT_2889 Membrane-bound lytic murein transglycosylase low > 76
Pantoea sp. MT58 0.28 IAI47_08170 D-cysteine desulfhydrase 0.18 IAI47_04000 murein transglycosylase A low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1693 D-cysteine desulfhydrase (EC 4.4.1.15) 0.19 GFF4871 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) low > 78
Enterobacter sp. TBS_079 0.28 MPMX20_02844 D-cysteine desulfhydrase 0.19 MPMX20_03676 Membrane-bound lytic murein transglycosylase A low > 85

Not shown: 16 genomes with orthologs for RR42_RS32990 only; 14 genomes with orthologs for RR42_RS18270 only