Conservation of cofitness between RR42_RS11260 and RR42_RS11275 in Cupriavidus basilensis FW507-4G11

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) 1.0 RR42_RS11275 3-methylitaconate isomerase 0.92 2
Ralstonia sp. UNC404CL21Col 0.88 ABZR87_RS14590 methylisocitrate lyase 0.87 ABZR87_RS16730 2-methylaconitate cis-trans isomerase PrpF low > 80
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS02670 methylisocitrate lyase 0.85 RALBFv3_RS22835 2-methylaconitate cis-trans isomerase PrpF low > 76
Ralstonia solanacearum UW163 0.87 UW163_RS11055 methylisocitrate lyase 0.85 UW163_RS23455 2-methylaconitate cis-trans isomerase PrpF — —
Ralstonia solanacearum PSI07 0.87 RPSI07_RS14645 methylisocitrate lyase 0.87 RPSI07_RS00385 2-methylaconitate cis-trans isomerase PrpF low > 81
Ralstonia solanacearum GMI1000 0.86 RS_RS10050 methylisocitrate lyase 0.86 RS_RS17725 2-methylaconitate cis-trans isomerase PrpF low > 80
Herbaspirillum seropedicae SmR1 0.84 HSERO_RS15660 2-methylisocitrate lyase 0.80 HSERO_RS11420 3-methylitaconate isomerase — —
Pseudomonas stutzeri RCH2 0.81 Psest_2321 methylisocitrate lyase 0.81 Psest_2318 probable AcnD-accessory protein PrpF — —
Pseudomonas sp. RS175 0.81 PFR28_02928 2-methylisocitrate lyase 0.85 PFR28_02924 2-methyl-aconitate isomerase 0.80 3
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) 0.86 Pf6N2E2_6064 2-methylaconitate isomerase 0.66 2
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_20865 2-methylisocitrate lyase 0.85 AO356_20880 3-methylitaconate isomerase 0.58 8
Pseudomonas putida KT2440 0.81 PP_2334 2-methylisocitrate lyase 0.85 PP_2337 aconitate isomerase 0.54 3
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_00900 2-methylisocitrate lyase 0.86 AO353_00885 3-methylitaconate isomerase 0.76 1
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) 0.87 Pf1N1B4_3822 2-methylaconitate cis-trans isomerase — —
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) 0.87 PfGW456L13_4115 2-methylaconitate cis-trans isomerase 0.87 5
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS17555 methylisocitrate lyase 0.86 QEN71_RS31055 2-methylaconitate cis-trans isomerase PrpF low > 153
Pseudomonas simiae WCS417 0.80 PS417_21080 2-methylisocitrate lyase 0.87 PS417_21065 3-methylitaconate isomerase — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS22690 methylisocitrate lyase 0.86 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS22690 methylisocitrate lyase 0.86 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.56 3
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_2085 methylisocitrate lyase 0.81 Psyr_2088 2-methylaconitate cis-trans isomerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_2085 methylisocitrate lyase 0.81 Psyr_2088 2-methylaconitate cis-trans isomerase low > 86
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS08480 methylisocitrate lyase 0.84 ABZR86_RS08430 2-methylaconitate cis-trans isomerase PrpF 0.56 4
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.3981.1 Methylisocitrate lyase (EC 4.1.3.30) 0.80 Xcc-8004.3976.1 2-methylaconitate cis-trans isomerase low > 74
Pseudomonas sp. S08-1 0.73 OH686_01690 methylisocitrate lyase 0.82 OH686_01675 probable AcnD-accessory protein PrpF — —
Lysobacter sp. OAE881 0.67 ABIE51_RS06015 methylisocitrate lyase 0.81 ABIE51_RS09485 2-methylaconitate cis-trans isomerase PrpF — —
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1343 methylisocitrate lyase 0.78 B158DRAFT_1346 2-methylaconitate cis-trans isomerase 0.43 25
Shewanella loihica PV-4 0.66 Shew_1820 prpB 2-methylisocitrate lyase (RefSeq) 0.73 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) 0.74 2
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06735 methylisocitrate lyase 0.74 CSW01_06750 2-methylaconitate cis-trans isomerase PrpF low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_03129 Methylisocitrate lyase 0.71 MIT1002_03132 3-methylitaconate isomerase — —
Marinobacter adhaerens HP15 0.64 HP15_1932 methylisocitrate lyase 2 0.77 HP15_1929 AcnD-accessory protein PrpF — —
Acinetobacter radioresistens SK82 0.63 MPMX26_01289 2-methylisocitrate lyase 0.75 MPMX26_00659 2-methyl-aconitate isomerase — —
Shewanella oneidensis MR-1 0.61 SO0345 prpB methylisocitrate lyase (NCBI ptt file) 0.80 SO0342 conserved hypothetical protein (NCBI ptt file) 0.34 70
Shewanella amazonensis SB2B 0.61 Sama_3294 prpB 2-methylisocitrate lyase (RefSeq) 0.76 Sama_3297 hypothetical protein (RefSeq) 0.53 2
Shewanella sp. ANA-3 0.60 Shewana3_3825 prpB 2-methylisocitrate lyase (RefSeq) 0.81 Shewana3_3828 methylitaconate delta2-delta3-isomerase (RefSeq) 0.78 6

Not shown: 20 genomes with orthologs for RR42_RS11260 only; 7 genomes with orthologs for RR42_RS11275 only