Conservation of cofitness between RR42_RS13190 and RR42_RS07565 in Cupriavidus basilensis FW507-4G11

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD 1.0 RR42_RS07565 transcription accessory protein 0.51 8
Ralstonia solanacearum UW163 0.60 UW163_RS12695 hypothetical protein 0.83 UW163_RS14855 RNA-binding transcriptional accessory protein — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS15230 hypothetical protein 0.83 RALBFv3_RS01545 RNA-binding transcriptional accessory protein low > 76
Ralstonia solanacearum PSI07 0.59 RPSI07_RS18145 LysM peptidoglycan-binding domain-containing protein 0.83 RPSI07_RS15945 RNA-binding transcriptional accessory protein low > 81
Ralstonia solanacearum GMI1000 0.57 RS_RS06040 LysM peptidoglycan-binding domain-containing protein 0.83 RS_RS08180 RNA-binding transcriptional accessory protein low > 80
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS10870 peptidoglycan DD-metalloendopeptidase family protein 0.85 ABZR87_RS13340 Tex family protein low > 80
Paraburkholderia graminis OAS925 0.48 ABIE53_002056 lipoprotein NlpD 0.75 ABIE53_002728 uncharacterized protein low > 113
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS22245 peptidoglycan DD-metalloendopeptidase family protein 0.74 QEN71_RS06045 Tex family protein — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS09110 peptidase M23 0.75 BPHYT_RS12510 RNA-binding protein — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00843 lipoprotein NlpD 0.75 H281DRAFT_00530 uncharacterized protein low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF3881 Lipoprotein NlpD 0.57 GFF4649 Transcription accessory protein (S1 RNA-binding domain) low > 90
Variovorax sp. SCN45 0.42 GFF2843 Murein hydrolase activator NlpD 0.57 GFF2 Transcription accessory protein (S1 RNA-binding domain) low > 127
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1786 Lipoprotein NlpD 0.57 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) — —
Dechlorosoma suillum PS 0.41 Dsui_1970 metalloendopeptidase-like membrane protein 0.67 Dsui_2546 transcriptional accessory protein low > 51
Variovorax sp. OAS795 0.40 ABID97_RS10725 peptidoglycan DD-metalloendopeptidase family protein 0.57 ABID97_RS15930 Tex family protein low > 91
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS14835 peptidase M23 0.64 HSERO_RS20945 RNA-binding protein 0.31 73
Alteromonas macleodii MIT1002 0.33 MIT1002_00626 Murein hydrolase activator NlpD precursor 0.59 MIT1002_04012 hypothetical protein low > 70
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_16610 peptigoglycan-binding protein LysM 0.63 AO353_11740 DNA damage response protein (yhgF like) (from data) — —
Pseudomonas putida KT2440 0.33 PP_1622 metallopeptidase, M23B subfamily 0.63 PP_0245 putative transcriptional accessory protein — —
Pseudomonas fluorescens SBW25 0.32 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein 0.63 PFLU_RS01275 RNA-binding transcriptional accessory protein — —
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein 0.63 PFLU_RS01275 RNA-binding transcriptional accessory protein — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B 0.63 Psyr_0257 RNA binding S1 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B 0.63 Psyr_0257 RNA binding S1 — —
Shewanella loihica PV-4 0.31 Shew_1212 peptidase M23B (RefSeq) 0.56 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_05890 peptigoglycan-binding protein LysM 0.63 AO356_10175 transcription accessory protein — —
Pseudomonas sp. S08-1 0.31 OH686_18180 Murein hydrolase activator NlpD 0.64 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) low > 80
Pseudomonas stutzeri RCH2 0.31 Psest_2807 Membrane proteins related to metalloendopeptidases 0.62 Psest_3996 Transcriptional accessory protein — —
Pseudomonas simiae WCS417 0.31 PS417_06360 peptigoglycan-binding protein LysM 0.63 PS417_01165 transcription accessory protein — —
Pseudomonas sp. RS175 0.31 PFR28_00426 hypothetical protein 0.63 PFR28_04867 Protein YhgF — —
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases 0.58 B158DRAFT_0683 Transcriptional accessory protein 0.78 13
Shewanella oneidensis MR-1 0.29 SO3433 nlpD lipoprotein NlpD (NCBI ptt file) 0.56 SO4629 conserved hypothetical protein (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_02830 murein hydrolase activator NlpD 0.59 CSW01_13705 RNA-binding transcriptional accessory protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.3127.1 Lipoprotein NlpD 0.60 Xcc-8004.2426.1 Transcription accessory protein (S1 RNA-binding domain) — —
Lysobacter sp. OAE881 0.27 ABIE51_RS06500 peptidoglycan DD-metalloendopeptidase family protein 0.61 ABIE51_RS00300 Tex family protein low > 62
Castellaniella sp019104865 MT123 0.27 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein 0.60 ABCV34_RS01870 Tex family protein — —

Not shown: 0 genomes with orthologs for RR42_RS13190 only; 59 genomes with orthologs for RR42_RS07565 only