Conservation of cofitness between RR42_RS03420 and RR42_RS05210 in Cupriavidus basilensis FW507-4G11

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS03420 bile acid:sodium symporter 1.0 RR42_RS05210 malic enzyme 0.37 2
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS00755 bile acid:sodium symporter family protein 0.80 ABZR87_RS15110 NADP-dependent malic enzyme low > 80
Ralstonia solanacearum PSI07 0.64 RPSI07_RS12190 bile acid:sodium symporter 0.81 RPSI07_RS14050 NADP-dependent malic enzyme low > 81
Ralstonia solanacearum GMI1000 0.64 RS_RS12725 bile acid:sodium symporter 0.81 RS_RS10650 NADP-dependent malic enzyme low > 80
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05105 bile acid:sodium symporter 0.81 RALBFv3_RS03260 NADP-dependent malic enzyme low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS08520 bile acid:sodium symporter 0.81 UW163_RS10465 NADP-dependent malic enzyme — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS13635 membrane protein 0.65 HSERO_RS05745 NADP-dependent malic enzyme oxidoreductase low > 78
Rhizobium sp. OAE497 0.42 ABIE40_RS16305 bile acid:sodium symporter family protein 0.55 ABIE40_RS10450 NADP-dependent malic enzyme 0.40 29
Dickeya dadantii 3937 0.42 DDA3937_RS10620 bile acid:sodium symporter 0.62 DDA3937_RS04355 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 74
Agrobacterium fabrum C58 0.41 Atu3888 hypothetical protein 0.55 Atu1652 NADP-dependent malic enzyme — —
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4834.1 Sodium - Bile acid symporter 0.58 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) — —
Dickeya dianthicola ME23 0.41 DZA65_RS11100 bile acid:sodium symporter 0.61 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.41 HGI48_RS10620 bile acid:sodium symporter 0.61 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 71
Sinorhizobium meliloti 1021 0.41 SMc04030 hypothetical protein 0.54 SMc00169 malic enzyme low > 103
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01729 transporter, sodium/bile acid symporter family 0.54 CCNA_02704 NADP-dependent malic enzyme low > 67
Caulobacter crescentus NA1000 0.41 CCNA_01729 transporter, sodium/bile acid symporter family 0.54 CCNA_02704 NADP-dependent malic enzyme — —
Dechlorosoma suillum PS 0.41 Dsui_0418 putative Na+-dependent transporter 0.65 Dsui_0543 malic enzyme low > 51
Azospirillum sp. SherDot2 0.41 MPMX19_03934 hypothetical protein 0.60 MPMX19_04254 NADP-dependent malic enzyme low > 112
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS00995 bile acid:sodium symporter family protein 0.65 QEN71_RS28455 NADP-dependent malic enzyme low > 153
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2930 Predicted Na+-dependent transporter 0.39 Ga0059261_3786 Malic enzyme low > 68
Escherichia coli ECRC102 0.40 NIAGMN_19995 yfeH Putative symporter YfeH 0.62 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC98 0.40 JDDGAC_26175 yfeH Putative symporter YfeH 0.62 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Escherichia coli ECOR38 0.40 HEPCGN_21405 yfeH Putative symporter YfeH 0.62 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 87
Escherichia fergusonii Becca 0.40 EFB2_01467 hypothetical protein 0.62 EFB2_01425 NADP-dependent malic enzyme low > 86
Escherichia coli ECRC100 0.40 OKFHMN_22225 yfeH Putative symporter YfeH 0.62 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 80
Escherichia coli ECRC101 0.40 MCAODC_12755 yfeH Putative symporter YfeH 0.62 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 87
Escherichia coli ECRC99 0.40 KEDOAH_05995 yfeH Putative symporter YfeH 0.62 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS13845 bile acid:sodium symporter family protein 0.62 ECOLIN_RS14055 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 55
Escherichia coli ECOR27 0.40 NOLOHH_13905 yfeH Putative symporter YfeH 0.62 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF2039 Putative cytochrome oxidase 0.61 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) low > 78
Escherichia coli ECRC62 0.40 BNILDI_12770 yfeH Putative symporter YfeH 0.62 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Escherichia coli BL21 0.40 ECD_02309 putative inorganic ion transporter 0.62 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01314 hypothetical protein 0.62 OHPLBJKB_01268 NADP-dependent malic enzyme low > 73
Escherichia coli BW25113 0.40 b2410 yfeH predicted inner membrane protein (NCBI) 0.62 b2463 maeB malic enzyme (NCBI) 0.31 1
Rahnella sp. WP5 0.40 EX31_RS06855 bile acid:sodium symporter 0.63 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 89
Variovorax sp. SCN45 0.39 GFF6063 Sodium/bile acid symporter family 0.69 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_02114 solute carrier family 10 (sodium/bile acid cotransporter), member 7 0.65 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 103
Paraburkholderia graminis OAS925 0.39 ABIE53_000558 sodium/bile acid cotransporter 7 0.66 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.73 3
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS17040 bile acid:sodium symporter family protein 0.60 ABZR86_RS12415 NADP-dependent malic enzyme low > 74
Klebsiella michiganensis M5al 0.39 BWI76_RS20615 sodium symporter 0.61 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase low > 92
Magnetospirillum magneticum AMB-1 0.39 AMB_RS08405 bile acid:sodium symporter 0.58 AMB_RS03695 NADP-dependent malic enzyme low > 64
Serratia liquefaciens MT49 0.38 IAI46_18420 bile acid:sodium symporter 0.63 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Enterobacter asburiae PDN3 0.38 EX28DRAFT_0219 Predicted Na+-dependent transporter 0.61 EX28DRAFT_0198 Malic enzyme low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF18 Sodium/bile acid symporter family 0.67 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) low > 90
Acinetobacter radioresistens SK82 0.38 MPMX26_01062 hypothetical protein 0.60 MPMX26_01000 NADP-dependent malic enzyme low > 36
Enterobacter sp. TBS_079 0.38 MPMX20_03303 hypothetical protein 0.62 MPMX20_03324 NADP-dependent malic enzyme low > 85
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS02065 membrane protein 0.65 BPHYT_RS18310 malic enzyme low > 109
Pectobacterium carotovorum WPP14 0.38 HER17_RS10785 bile acid:sodium symporter 0.63 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS07065 bile acid:sodium symporter 0.59 LRK54_RS11170 NADP-dependent malic enzyme low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06805 bile acid:sodium symporter family protein 0.59 LRK55_RS10875 NADP-dependent malic enzyme — —
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS15185 bile acid:sodium symporter 0.38 A4249_RS13295 NADP-dependent malic enzyme — —
Castellaniella sp019104865 MT123 0.36 ABCV34_RS10910 bile acid:sodium symporter family protein 0.66 ABCV34_RS01715 NADP-dependent malic enzyme low > 48
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_16570 Bile acid:sodium symporter 0.59 OKGIIK_12705 pta NADP-dependent malic enzyme low > 52

Not shown: 17 genomes with orthologs for RR42_RS03420 only; 16 genomes with orthologs for RR42_RS05210 only