Conservation of cofitness between RR42_RS04540 and RR42_RS00910 in Cupriavidus basilensis FW507-4G11

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS04540 lytic transglycosylase 1.0 RR42_RS00910 hypothetical protein 0.38 14
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS09520 lytic murein transglycosylase B 0.59 ABZR87_RS06285 YchJ family protein low > 80
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS13830 lytic murein transglycosylase B 0.56 RALBFv3_RS10485 hypothetical protein low > 76
Ralstonia solanacearum UW163 0.67 UW163_RS15980 lytic murein transglycosylase B 0.56 UW163_RS03095 hypothetical protein — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS19640 lytic murein transglycosylase B 0.60 RPSI07_RS22830 hypothetical protein low > 81
Ralstonia solanacearum GMI1000 0.65 RS_RS04565 lytic murein transglycosylase B 0.55 RS_RS01325 hypothetical protein low > 80
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_03910 membrane-bound lytic murein transglycosylase B 0.45 H281DRAFT_02092 SEC-C motif-containing protein low > 103
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS04140 lytic murein transglycosylase B 0.48 QEN71_RS01110 YchJ family protein low > 153
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS14840 lytic transglycosylase 0.42 BPHYT_RS02215 hypothetical protein — —
Paraburkholderia graminis OAS925 0.54 ABIE53_003143 membrane-bound lytic murein transglycosylase B 0.46 ABIE53_000587 SEC-C motif-containing protein low > 113
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS04945 murein transglycosylase 0.46 HSERO_RS23450 hypothetical protein low > 78
Acidovorax sp. GW101-3H11 0.37 Ac3H11_3197 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.39 Ac3H11_3004 UPF0225 protein YchJ low > 79
Variovorax sp. SCN45 0.34 GFF2666 Membrane-bound lytic murein transglycosylase B 0.35 GFF1999 GTG start codon — —
Pseudomonas simiae WCS417 0.34 PS417_24715 lytic transglycosylase 0.23 PS417_06485 hypothetical protein low > 88
Variovorax sp. OAS795 0.34 ABID97_RS19915 lytic murein transglycosylase B 0.38 ABID97_RS25230 YchJ family metal-binding protein low > 91
Pseudomonas fluorescens SBW25 0.34 PFLU_RS26645 lytic murein transglycosylase B 0.22 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS26645 lytic murein transglycosylase B 0.22 PFLU_RS06515 YchJ family protein low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF5533 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.41 GFF1717 UPF0225 protein YchJ low > 90
Escherichia coli Nissle 1917 0.32 ECOLIN_RS27170 lytic murein transglycosylase B 0.32 ECOLIN_RS07465 YchJ family protein — —
Dechlorosoma suillum PS 0.31 Dsui_1972 lytic murein transglycosylase B 0.33 Dsui_2325 hypothetical protein low > 51
Escherichia coli BW25113 0.31 b2701 mltB membrane-bound lytic murein transglycosylase B (NCBI) 0.32 b1233 ychJ hypothetical protein (NCBI) low > 76
Escherichia fergusonii Becca 0.31 EFB2_01223 Membrane-bound lytic murein transglycosylase B 0.31 EFB2_02693 hypothetical protein low > 86
Escherichia coli BL21 0.31 ECD_02551 membrane-bound lytic murein transglycosylase B 0.32 ECD_01209 UPF0225 family protein low > 61
Rahnella sp. WP5 0.31 EX31_RS07810 lytic murein transglycosylase B 0.23 EX31_RS10110 YchJ family protein low > 89
Serratia liquefaciens MT49 0.31 IAI46_18155 lytic murein transglycosylase B 0.30 IAI46_14260 YchJ family protein low > 86
Erwinia tracheiphila SCR3 0.30 LU632_RS15745 mltB lytic murein transglycosylase B 0.31 LU632_RS12935 YchJ family protein low > 74
Pectobacterium carotovorum WPP14 0.30 HER17_RS16185 lytic murein transglycosylase B 0.25 HER17_RS11060 YchJ family protein low > 75
Klebsiella michiganensis M5al 0.30 BWI76_RS22210 murein transglycosylase B 0.31 BWI76_RS17285 hypothetical protein low > 92
Pantoea sp. MT58 0.30 IAI47_04275 lytic murein transglycosylase B 0.30 IAI47_09015 YchJ family protein low > 76
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2790 lytic murein transglycosylase B 0.31 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria low > 76
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0081 lytic murein transglycosylase B 0.28 B158DRAFT_1196 Uncharacterized protein conserved in bacteria low > 40
Castellaniella sp019104865 MT123 0.29 ABCV34_RS07050 lytic murein transglycosylase B 0.42 ABCV34_RS04500 YchJ family metal-binding protein low > 48
Dickeya dadantii 3937 0.28 DDA3937_RS03745 lytic murein transglycosylase B 0.27 DDA3937_RS10330 YchJ family protein low > 74
Dickeya dianthicola 67-19 0.28 HGI48_RS03780 lytic murein transglycosylase B 0.26 HGI48_RS10340 YchJ family protein low > 71
Dickeya dianthicola ME23 0.28 DZA65_RS03910 lytic murein transglycosylase B 0.26 DZA65_RS10815 YchJ family protein low > 75
Shewanella oneidensis MR-1 0.26 SO1166 membrane-bound lytic transglycosylase, putative (NCBI ptt file) 0.22 SO2497 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.26 Shewana3_0993 lytic murein transglycosylase B (RefSeq) 0.22 Shewana3_2159 SecC motif-containing protein (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS17480 lytic murein transglycosylase B 0.33 ABZR86_RS16820 YchJ family metal-binding protein low > 74
Rhodanobacter denitrificans MT42 0.24 LRK55_RS06245 lytic murein transglycosylase B 0.36 LRK55_RS10685 YchJ family metal-binding protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS06500 lytic murein transglycosylase B 0.36 LRK54_RS10980 hypothetical protein low > 59
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_00080 mltB lytic murein transglycosylase B 0.37 OKGIIK_12900 ychJ UPF0225 protein XHC_4340 low > 52

Not shown: 18 genomes with orthologs for RR42_RS04540 only; 14 genomes with orthologs for RR42_RS00910 only