| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3347 | | transcriptional regulator, TetR family | 1.0 | Psyr_4100 | | D-alanine--D-alanine ligase | 0.47 | 20 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3347 | | transcriptional regulator, TetR family | 1.00 | Psyr_4100 | | D-alanine--D-alanine ligase | low | > 86 |
| Rahnella sp. WP5 | 0.55 | EX31_RS00510 | | TetR/AcrR family transcriptional regulator | 0.49 | EX31_RS03595 | | D-alanine--D-alanine ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS13910 | | TetR/AcrR family transcriptional regulator | 0.51 | HER17_RS03170 | | D-alanine--D-alanine ligase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS06805 | | transcriptional regulator | 0.41 | HSERO_RS01675 | | D-alanine--D-alanine ligase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS18275 | | TetR/AcrR family transcriptional regulator | 0.46 | ABZR86_RS11320 | | D-alanine--D-alanine ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS01945 | | TetR/AcrR family transcriptional regulator | 0.42 | RALBFv3_RS06265 | | D-alanine--D-alanine ligase | — | — |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS15255 | | TetR/AcrR family transcriptional regulator | 0.42 | UW163_RS07360 | | D-alanine--D-alanine ligase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.1792.1 | | Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family | 0.44 | Xcc-8004.4352.1 | | D-alanine--D-alanine ligase B (EC 6.3.2.4) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_010135 | | TetR/AcrR family transcriptional regulator | 0.18 | TX73_018270 | | D-alanine--D-alanine ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS21015 | | TetR/AcrR family transcriptional regulator | 0.42 | RS_RS14215 | | D-alanine--D-alanine ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.27 | RPSI07_RS03375 | | TetR/AcrR family transcriptional regulator | 0.43 | RPSI07_RS10975 | | D-alanine--D-alanine ligase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.25 | AMB_RS21070 | | TetR family transcriptional regulator | 0.25 | AMB_RS19490 | | D-alanine--D-alanine ligase | — | — |
| Pseudomonas putida KT2440 | 0.22 | PP_1515 | | Transcriptional regulator, tetR family | 0.80 | PP_1339 | | D-alanine--D-alanine ligase B | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.22 | AO356_06140 | | TetR family transcriptional regulator | 0.82 | AO356_17170 | | D-alanine--D-alanine ligase | — | — |
| Pseudomonas sp. S08-1 | 0.22 | OH686_06750 | | Transcriptional regulator, AcrR family | 0.81 | OH686_08280 | | D-alanine--D-alanine ligase | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_04289 | | hypothetical protein | 0.26 | MPMX19_01682 | | D-alanine--D-alanine ligase B | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c31580 | | putative HTH-type transcriptional regulator, TetR family | 0.28 | PGA1_c09660 | | D-alanine--D-alanine ligase Ddl | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.20 | AO353_16355 | | TetR family transcriptional regulator | 0.82 | AO353_15350 | | D-alanine--D-alanine ligase | — | — |
| Lysobacter sp. OAE881 | 0.20 | ABIE51_RS10665 | | TetR/AcrR family transcriptional regulator | 0.41 | ABIE51_RS04755 | | D-alanine--D-alanine ligase | — | — |
| Pseudomonas sp. RS175 | 0.20 | PFR28_00377 | | hypothetical protein | 0.81 | PFR28_03585 | | D-alanine--D-alanine ligase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4732 | | Transcriptional regulator, TetR family | 0.82 | PfGW456L13_1655 | | D-alanine--D-alanine ligase (EC 6.3.2.4) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.19 | Pf1N1B4_3061 | | Transcriptional regulator, TetR family | 0.81 | Pf1N1B4_941 | | D-alanine--D-alanine ligase (EC 6.3.2.4) | — | — |
| Pseudomonas stutzeri RCH2 | 0.19 | Psest_1564 | | Transcriptional regulator | 0.80 | Psest_3257 | | D-alanine--D-alanine ligase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.19 | DVU2819 | | transcriptional regulator, TetR family (TIGR) | 0.23 | DVU0334 | | D-alanine--D-alanine ligase (TIGR) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_0106 | | transcriptional regulator, TetR family (RefSeq) | 0.26 | Dshi_2419 | | D-alanine--D-alanine ligase (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS16840 | | TetR/AcrR family transcriptional regulator | 0.27 | ABIE40_RS11810 | | D-alanine--D-alanine ligase | low | > 107 |
| Pseudomonas fluorescens FW300-N2E2 | 0.18 | Pf6N2E2_3093 | | Transcriptional regulator, TetR family | 0.82 | Pf6N2E2_5358 | | D-alanine--D-alanine ligase (EC 6.3.2.4) | — | — |
| Alteromonas macleodii MIT1002 | 0.18 | MIT1002_00424 | | Solvent efflux pump srpABC operon corepressor | 0.55 | MIT1002_03023 | | D-alanine--D-alanine ligase | — | — |
| Pseudomonas fluorescens SBW25 | 0.18 | PFLU_RS06175 | | TetR/AcrR family transcriptional regulator | 0.81 | PFLU_RS04715 | | D-alanine--D-alanine ligase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.18 | PFLU_RS06175 | | TetR/AcrR family transcriptional regulator | 0.81 | PFLU_RS04715 | | D-alanine--D-alanine ligase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.18 | PS417_06105 | | TetR family transcriptional regulator | 0.82 | PS417_04650 | | D-alanine--D-alanine ligase | low | > 88 |
| Sphingomonas koreensis DSMZ 15582 | 0.17 | Ga0059261_3939 | | transcriptional regulator, TetR family | 0.26 | Ga0059261_3468 | | D-alanine--D-alanine ligase (EC 6.3.2.4) | — | — |
| Agrobacterium fabrum C58 | 0.16 | Atu4477 | | TetR family transcriptional regulator | 0.28 | Atu2089 | | D-alanylalanine synthetase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.15 | GFF5760 | | Transcriptional regulator, TetR family | 0.43 | GFF565 | | D-alanine--D-alanine ligase (EC 6.3.2.4) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS14980 | | TetR/AcrR family transcriptional regulator | 0.24 | A4249_RS09895 | | D-alanine--D-alanine ligase | — | — |
| Acinetobacter radioresistens SK82 | 0.15 | MPMX26_01288 | | hypothetical protein | 0.52 | MPMX26_02932 | | D-alanine--D-alanine ligase | — | — |
| Sinorhizobium meliloti 1021 | 0.15 | SMc03169 | | transcriptional regulator | 0.29 | SMc01871 | | D-alanine--D-alanine ligase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.13 | CCNA_00967 | | TetR-family transcriptional regulator | 0.26 | CCNA_02626 | | D-alanine--D-alanine ligase | — | — |
| Caulobacter crescentus NA1000 | 0.13 | CCNA_00967 | | TetR-family transcriptional regulator | 0.26 | CCNA_02626 | | D-alanine--D-alanine ligase | — | — |
Not shown: 10 genomes with orthologs for Psyr_3347 only; 39 genomes with orthologs for Psyr_4100 only