Conservation of cofitness between Psyr_0025 and Psyr_3174 in Pseudomonas syringae pv. syringae B728a

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_3174 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase 0.65 16
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_3174 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase low > 86
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.89 PS417_16465 sirohydrochlorin ferrochelatase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.90 Pf1N1B4_4065 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) 0.54 20
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.89 PfGW456L13_2656 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) 0.82 4
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.91 AO353_27625 sirohydrochlorin ferrochelatase — —
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.88 PFR28_02603 Siroheme synthase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.89 PFLU_RS18505 uroporphyrinogen-III C-methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.89 PFLU_RS18505 uroporphyrinogen-III C-methyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.88 AO356_22200 sirohydrochlorin ferrochelatase 0.48 48
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.89 Pf6N2E2_302 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.79 PP_3999 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.77 OH686_00285 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.80 Psest_2037 uroporphyrin-III C-methyltransferase — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.49 ECOLIN_RS19285 siroheme synthase CysG low > 55
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.49 b3368 cysG fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase (NCBI) 0.89 45
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.49 ECD_03219 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.49 OHPLBJKB_00334 Siroheme synthase low > 73
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.49 NOLOHH_08980 cysG siroheme synthase CysG 0.86 41
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.49 BNILDI_02540 cysG siroheme synthase CysG low > 75
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.49 KEDOAH_10960 cysG siroheme synthase CysG — —
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.49 JDDGAC_20810 cysG siroheme synthase CysG low > 86
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.49 NIAGMN_14950 cysG siroheme synthase CysG — —
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.49 OKFHMN_17180 cysG siroheme synthase CysG 0.97 9
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.49 MCAODC_07710 cysG siroheme synthase CysG low > 87
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.47 IAI47_04175 uroporphyrinogen-III C-methyltransferase — —
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.49 EFB2_00454 Siroheme synthase low > 86
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.49 HEPCGN_16010 cysG siroheme synthase CysG 0.77 64
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.46 DZA65_RS18075 uroporphyrinogen-III C-methyltransferase — —
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.50 MPMX20_04271 Siroheme synthase low > 85
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.50 BWI76_RS26055 siroheme synthase 0.70 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.49 GFF3700 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) low > 78
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.46 HGI48_RS17000 uroporphyrinogen-III C-methyltransferase — —
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.45 DDA3937_RS16930 uroporphyrinogen-III C-methyltransferase — —
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.47 IAI46_03710 uroporphyrinogen-III C-methyltransferase low > 86
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.48 HER17_RS01835 siroheme synthase CysG low > 75
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.50 EX28DRAFT_4160 uroporphyrin-III C-methyltransferase low > 76
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.48 LU632_RS06420 cysG siroheme synthase CysG 0.50 57
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.48 EX31_RS04680 uroporphyrinogen-III C-methyltransferase — —
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.37 ABCV34_RS00210 siroheme synthase CysG low > 48
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.53 MIT1002_00665 Siroheme synthase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX26_00706 Siroheme synthase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.40 ABZR86_RS05880 siroheme synthase CysG 0.91 62
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.36 LRK55_RS00685 siroheme synthase CysG low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.37 LRK54_RS00910 siroheme synthase CysG low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.39 OKGIIK_05980 cysG siroheme synthase CysG low > 52
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.41 ABIE51_RS15855 siroheme synthase CysG 0.67 50
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0259 shikimate 5-dehydrogenase 0.45 B158DRAFT_2163 uroporphyrin-III C-methyltransferase low > 40
Dinoroseobacter shibae DFL-12 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.27 Dshi_1155 uroporphyrin-III C-methyltransferase (RefSeq) — —
Agrobacterium fabrum C58 0.23 Atu0003 shikimate 5-dehydrogenase 0.34 Atu3899 siroheme synthase — —
Sinorhizobium meliloti 1021 0.22 SMc02791 shikimate 5-dehydrogenase 0.34 SMc01053 siroheme synthase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.33 TX73_021850 siroheme synthase CysG — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.29 Rru_A1933 Uroporphyrin-III C-methyltransferase (NCBI) — —
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.31 ABIE41_RS15910 siroheme synthase CysG — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.33 ABIE40_RS09140 siroheme synthase CysG — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.35 A4249_RS09675 siroheme synthase CysG — —

Not shown: 36 genomes with orthologs for Psyr_0025 only; 1 genomes with orthologs for Psyr_3174 only