Conservation of cofitness between Psyr_0212 and Psyr_2277 in Pseudomonas syringae pv. syringae B728a

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0212 Conserved hypothetical protein 255 1.0 Psyr_2277 ammonium transporter 0.36 14
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0212 Conserved hypothetical protein 255 1.00 Psyr_2277 ammonium transporter low > 86
Pseudomonas fluorescens SBW25 0.88 PFLU_RS29495 YicC family protein 0.91 PFLU_RS11425 ammonium transporter low > 109
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_12495 hypothetical protein 0.89 AO356_30065 ammonia channel protein low > 104
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS29495 YicC family protein 0.91 PFLU_RS11425 ammonium transporter low > 109
Pseudomonas lactucae CFBP13502 0.87 GEMAOFIL_00031 hypothetical protein 0.93 GEMAOFIL_02475 Ammonia channel low > 93
Pseudomonas sp. BP01 0.86 JOY50_RS09020 YicC/YloC family endoribonuclease 0.62 JOY50_RS07740 ammonium transporter low > 84
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_01110 YicC family protein 0.13 CSW01_03200 ammonium transporter low > 62
Alteromonas macleodii MIT1002 0.50 MIT1002_04072 hypothetical protein 0.13 MIT1002_00417 Ammonia transporter low > 70
Shewanella sp. ANA-3 0.49 Shewana3_3778 hypothetical protein (RefSeq) 0.46 Shewana3_0778 ammonium transporter (RefSeq) low > 73
Shewanella loihica PV-4 0.49 Shew_3489 hypothetical protein (RefSeq) 0.16 Shew_0847 Rh family protein/ammonium transporter (RefSeq) low > 60
Shewanella oneidensis MR-1 0.49 SO4257 conserved hypothetical protein TIGR00255 (NCBI ptt file) 0.15 SO0760 amt ammonium transporter (NCBI ptt file) 0.26 49
Shewanella amazonensis SB2B 0.49 Sama_0319 hypothetical protein (RefSeq) 0.14 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) low > 62
Marinobacter adhaerens HP15 0.47 HP15_301 conserved hypothetical protein 0.15 HP15_4007 ammonium transporter low > 73
Klebsiella michiganensis M5al 0.46 BWI76_RS27395 hypothetical protein 0.40 BWI76_RS06605 ammonium transporter low > 92
Erwinia tracheiphila HP pepo 2.2 0.45 IJEDHG_07725 YicC-like family N-terminal region 0.41 IJEDHG_16515 amtB ammonium transporter AmtB low > 61
Erwinia tracheiphila SCR3 0.45 LU632_RS22050 YicC family protein 0.41 LU632_RS18270 amtB ammonium transporter AmtB low > 74
Escherichia coli Nissle 1917 0.45 ECOLIN_RS20760 YicC/YloC family endoribonuclease 0.40 ECOLIN_RS02700 ammonium transporter AmtB low > 55
Escherichia coli BW25113 0.44 b3644 yicC hypothetical protein (NCBI) 0.40 b0451 amtB ammonium transporter (NCBI) low > 76
Escherichia coli ECRC99 0.44 KEDOAH_12560 yicC UPF0701 protein YicC 0.40 KEDOAH_19705 amtB ammonium transporter AmtB — —
Escherichia coli BL21 0.44 ECD_03501 UPF0701 family protein 0.40 ECD_00403 ammonium transporter low > 61
Escherichia coli ECRC102 0.44 NIAGMN_13345 yicC UPF0701 protein YicC 0.40 NIAGMN_06315 amtB ammonium transporter AmtB low > 80
Escherichia coli ECRC100 0.44 OKFHMN_15585 yicC UPF0701 protein YicC 0.40 OKFHMN_08260 amtB ammonium transporter AmtB low > 79
Escherichia fergusonii Becca 0.44 EFB2_00169 hypothetical protein 0.40 EFB2_03606 Ammonia channel low > 86
Escherichia coli ECOR27 0.44 NOLOHH_07465 yicC UPF0701 protein YicC 0.40 NOLOHH_01195 amtB ammonium transporter AmtB low > 76
Escherichia coli ECOR38 0.44 HEPCGN_14405 yicC UPF0701 protein YicC 0.40 HEPCGN_06875 amtB ammonium transporter AmtB low > 88
Escherichia coli ECRC62 0.44 BNILDI_04050 yicC UPF0701 protein YicC 0.40 BNILDI_22610 amtB ammonium transporter AmtB low > 75
Escherichia coli ECRC101 0.44 MCAODC_06095 yicC UPF0701 protein YicC 0.40 MCAODC_27485 amtB ammonium transporter AmtB low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00058 hypothetical protein 0.40 OHPLBJKB_03222 Ammonia channel low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF365 Protein YicC 0.41 GFF4368 Ammonium transporter low > 78
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3894 TIGR00255 family protein 0.39 EX28DRAFT_2518 ammonium transporter low > 76
Escherichia coli ECRC98 0.44 JDDGAC_19210 yicC UPF0701 protein YicC 0.40 JDDGAC_11915 amtB ammonium transporter AmtB low > 87
Lysobacter sp. OAE881 0.42 ABIE51_RS17280 YicC/YloC family endoribonuclease 0.40 ABIE51_RS01435 ammonium transporter low > 62
Methylophilus sp. DMC18 0.37 GFF2133 hypothetical protein 0.49 GFF2224 Ammonia channel low > 43
Xanthobacter sp. DMC5 0.29 GFF3533 hypothetical protein 0.43 GFF3985 Ammonia channel — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3251 Protein YicC 0.41 GFF1922 Ammonium transporter — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_1528 domain of unknown function DUF1732 (RefSeq) 0.15 Dshi_0144 ammonium transporter (RefSeq) low > 64
Castellaniella sp019104865 MT123 0.26 ABCV34_RS03510 DUF1732 domain-containing protein 0.33 ABCV34_RS04770 ammonium transporter low > 48
Rhizobium sp. OAE497 0.25 ABIE40_RS06380 YicC/YloC family endoribonuclease 0.43 ABIE40_RS18420 ammonium transporter low > 107
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_1140 hypothetical protein (RefSeq) 0.34 DvMF_0866 ammonium transporter (RefSeq) low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS06780 YicC family protein 0.38 A4249_RS09990 ammonium transporter low > 48
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0898 conserved hypothetical protein (TIGR) 0.35 DVU1231 amt ammonium transporter (TIGR) low > 55
Bosea sp. OAE506 0.23 ABIE41_RS17740 YicC/YloC family endoribonuclease 0.44 ABIE41_RS04755 ammonium transporter low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS18780 YicC family protein 0.30 CA265_RS14975 ammonia channel protein low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2830 TIGR00255 family protein 0.28 Echvi_3535 ammonium transporter low > 79
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS07870 YicC family protein 0.22 HMPREF1181_RS16015 ammonium transporter low > 56
Phocaeicola dorei CL03T12C01 0.19 ABI39_RS08135 YicC family protein 0.21 ABI39_RS14275 ammonium transporter low > 72
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS00515 YicC family protein 0.21 HMPREF1058_RS06895 ammonium transporter low > 67
Cellulophaga baltica 18 0.19 M666_RS06130 YicC family protein 0.19 M666_RS19285 ammonium transporter low > 67
Bacteroides thetaiotaomicron VPI-5482 0.18 BT_2008 hypothetical protein (RefSeq) 0.22 BT0544 ammonium transporter (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_14585 YicC family protein 0.31 CA264_09145 ammonia channel protein low > 74

Not shown: 60 genomes with orthologs for Psyr_0212 only; 4 genomes with orthologs for Psyr_2277 only