Conservation of cofitness between Psyr_0506 and Psyr_2090 in Pseudomonas syringae pv. syringae B728a

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.0 Psyr_2090 phosphoenolpyruvate synthase 0.58 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.00 Psyr_2090 phosphoenolpyruvate synthase low > 86
Pseudomonas simiae WCS417 0.91 PS417_02175 transcriptional regulator 0.95 PS417_21020 phosphoenolpyruvate synthase low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.95 PFLU_RS22630 phosphoenolpyruvate synthase low > 109
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.93 Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.23 88
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.95 PFLU_RS22630 phosphoenolpyruvate synthase low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.93 PfGW456L13_4112 Phosphoenolpyruvate synthase (EC 2.7.9.2) low > 87
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.95 Pf1N1B4_3826 Phosphoenolpyruvate synthase (EC 2.7.9.2) low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_09015 transcriptional regulator 0.93 AO356_02825 phosphoenolpyruvate synthase 0.32 8
Pseudomonas sp. RS175 0.91 PFR28_05053 Bifunctional protein PutA 0.93 PFR28_01038 Phosphoenolpyruvate synthase low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.95 AO353_00865 phosphoenolpyruvate synthase low > 101
Pseudomonas putida KT2440 0.88 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase 0.93 PP_2082 phosphoenolpyruvate synthetase low > 96
Serratia liquefaciens MT49 0.76 IAI46_15745 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.70 IAI46_11115 phosphoenolpyruvate synthase low > 86
Pseudomonas sp. S08-1 0.76 OH686_06735 Transcriptional repressor of PutA and PutP / Proline dehydrogenase / Delta-1-pyrroline-5-carboxylate dehydrogenase 0.93 OH686_01660 phosphoenolpyruvate synthase low > 80
Rahnella sp. WP5 0.74 EX31_RS09420 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.70 EX31_RS13935 phosphoenolpyruvate synthase low > 89
Escherichia coli ECRC98 0.74 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 JDDGAC_01720 ppsA phosphoenolpyruvate synthase low > 86
Escherichia coli ECRC100 0.74 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 OKFHMN_27145 ppsA phosphoenolpyruvate synthase low > 80
Escherichia coli ECRC99 0.74 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 KEDOAH_00965 ppsA phosphoenolpyruvate synthase — —
Escherichia coli ECRC102 0.74 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 NIAGMN_00920 ppsA phosphoenolpyruvate synthase — —
Escherichia coli ECRC101 0.74 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 MCAODC_18265 ppsA phosphoenolpyruvate synthase low > 87
Escherichia coli Nissle 1917 0.74 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 ECOLIN_RS09510 phosphoenolpyruvate synthase — —
Escherichia coli BW25113 0.74 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) 0.71 b1702 pps phosphoenolpyruvate synthase (NCBI) low > 76
Escherichia coli ECRC62 0.74 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 BNILDI_16455 ppsA phosphoenolpyruvate synthase low > 75
Escherichia coli ECOR27 0.74 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 NOLOHH_17665 ppsA phosphoenolpyruvate synthase low > 75
Escherichia coli ECOR38 0.74 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 HEPCGN_05510 ppsA phosphoenolpyruvate synthase low > 87
Escherichia fergusonii Becca 0.74 EFB2_03066 Bifunctional protein PutA 0.71 EFB2_02289 Phosphoenolpyruvate synthase low > 86
Escherichia coli BL21 0.74 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.70 ECD_01671 phosphoenolpyruvate synthase low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS10795 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.71 BWI76_RS17065 phosphoenolpyruvate synthase low > 92
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1911 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.71 EX28DRAFT_1704 phosphoenolpyruvate synthase (EC 2.7.9.2) low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01702 Bifunctional protein PutA 0.71 MPMX20_01922 Phosphoenolpyruvate synthase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.70 GFF3539 Phosphoenolpyruvate synthase (EC 2.7.9.2) low > 78
Pantoea sp. MT58 0.71 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 IAI47_10905 phosphoenolpyruvate synthase 0.70 7
Dickeya dadantii 3937 0.71 DDA3937_RS20115 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 DDA3937_RS12805 phosphoenolpyruvate synthase low > 74
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.66 RR42_RS11790 phosphoenolpyruvate synthase low > 128
Pectobacterium carotovorum WPP14 0.70 HER17_RS01110 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.70 HER17_RS08885 phosphoenolpyruvate synthase low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS20255 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 HGI48_RS12875 phosphoenolpyruvate synthase low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS21300 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 DZA65_RS13340 phosphoenolpyruvate synthase low > 75
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS03970 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.66 ABZR87_RS11925 phosphoenolpyruvate synthase low > 80
Erwinia tracheiphila SCR3 0.69 LU632_RS13740 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.71 LU632_RS11025 ppsA phosphoenolpyruvate synthase low > 74
Ralstonia solanacearum GMI1000 0.69 RS_RS16540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.66 RS_RS07130 phosphoenolpyruvate synthase low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS04885 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.64 UW163_RS13805 phosphoenolpyruvate synthase — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS08725 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.66 RALBFv3_RS00475 phosphoenolpyruvate synthase — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS08540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.66 RPSI07_RS17015 phosphoenolpyruvate synthase low > 81
Acidovorax sp. GW101-3H11 0.65 Ac3H11_2850 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.66 Ac3H11_206 Phosphoenolpyruvate synthase (EC 2.7.9.2) low > 79
Variovorax sp. SCN45 0.64 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.66 GFF2818 Phosphoenolpyruvate synthase (EC 2.7.9.2) low > 127
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.67 BPHYT_RS12055 phosphoenolpyruvate synthase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_02404 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase 0.67 H281DRAFT_00627 phosphoenolpyruvate synthase low > 103
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS29240 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.66 QEN71_RS06505 phosphoenolpyruvate synthase low > 153
Paraburkholderia graminis OAS925 0.60 ABIE53_000244 RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase 0.67 ABIE53_002485 pyruvate,water dikinase low > 113
Castellaniella sp019104865 MT123 0.57 ABCV34_RS05285 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.67 ABCV34_RS04025 phosphoenolpyruvate synthase — —
Acinetobacter radioresistens SK82 0.55 MPMX26_01466 Bifunctional protein PutA 0.79 MPMX26_01166 Phosphoenolpyruvate synthase — —
Alteromonas macleodii MIT1002 0.38 MIT1002_00637 Bifunctional protein PutA 0.73 MIT1002_01816 Phosphoenolpyruvate synthase low > 70
Marinobacter adhaerens HP15 0.37 HP15_2688 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.81 HP15_2229 phosphoenolpyruvate synthase low > 73

Not shown: 11 genomes with orthologs for Psyr_0506 only; 20 genomes with orthologs for Psyr_2090 only