Conservation of cofitness between PfGW456L13_5137 and PfGW456L13_1553 in Pseudomonas fluorescens GW456-L13

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens GW456-L13 1.0 PfGW456L13_5137 Transcriptional regulator, LysR family 1.0 PfGW456L13_1553 Carbonic anhydrase (EC 4.2.1.1) 0.35 20
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_1207 Transcriptional regulator, LysR family 0.95 Pf1N1B4_2893 Carbonic anhydrase (EC 4.2.1.1) low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_07805 LysR family transcriptional regulator 0.92 AO356_16270 carbonate dehydratase low > 104
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_3445 Transcriptional regulator, LysR family 0.92 Pf6N2E2_5190 Carbonic anhydrase (EC 4.2.1.1) low > 103
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_05905 LysR family transcriptional regulator 0.93 AO353_14595 carbonate dehydratase low > 101
Pseudomonas sp. RS175 0.87 PFR28_00026 HTH-type transcriptional regulator DmlR 0.93 PFR28_03679 Carbonic anhydrase 2 low > 88
Pseudomonas simiae WCS417 0.80 PS417_23625 LysR family transcriptional regulator 0.93 PS417_03310 carbonate dehydratase low > 88
Pseudomonas fluorescens SBW25 0.78 PFLU_RS25440 LysR family transcriptional regulator 0.93 PFLU_RS03405 carbonate dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS25440 LysR family transcriptional regulator 0.93 PFLU_RS03405 carbonate dehydratase low > 109
Dickeya dadantii 3937 0.55 DDA3937_RS01770 LysR family transcriptional regulator 0.56 DDA3937_RS15980 carbonate dehydratase
Pantoea sp. MT58 0.55 IAI47_03165 LysR family transcriptional regulator 0.56 IAI47_15685 carbonate dehydratase low > 76
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS11395 LysR family transcriptional regulator 0.53 RR42_RS00880 carbonate dehydratase
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10585 LysR family transcriptional regulator 0.57 ABZR87_RS06310 carbonate dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS14925 LysR family transcriptional regulator 0.56 RALBFv3_RS10520 carbonate dehydratase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS12395 LysR family transcriptional regulator 0.56 UW163_RS03060 carbonate dehydratase
Pectobacterium carotovorum WPP14 0.54 HER17_RS19795 LysR family transcriptional regulator 0.56 HER17_RS05535 carbonate dehydratase
Ralstonia solanacearum GMI1000 0.54 RS_RS05740 LysR family transcriptional regulator 0.56 RS_RS01360 carbonate dehydratase low > 80
Dickeya dianthicola 67-19 0.54 HGI48_RS01665 LysR family transcriptional regulator 0.56 HGI48_RS16095 carbonate dehydratase
Serratia liquefaciens MT49 0.52 IAI46_21915 LysR family transcriptional regulator 0.57 IAI46_21270 carbonate dehydratase low > 86
Variovorax sp. SCN45 0.52 GFF2787 Transcriptional regulator PA1859, LysR family 0.51 GFF1991 Carbonic anhydrase, beta class (EC 4.2.1.1)
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS17240 LysR family transcriptional regulator 0.57 ABZR86_RS08905 carbonate dehydratase low > 74
Pseudomonas sp. S08-1 0.51 OH686_12450 Transcriptional regulator, LysR family 0.87 OH686_08030 Carbonic anhydrase, beta class low > 80
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1990 Transcriptional regulator, LysR family 0.49 Ac3H11_2992 Carbonic anhydrase (EC 4.2.1.1) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2875 Transcriptional regulator, LysR family 0.56 GFF1724 Carbonic anhydrase (EC 4.2.1.1)
Pseudomonas stutzeri RCH2 0.48 Psest_0042 Transcriptional regulator 0.85 Psest_1062 Carbonic anhydrase
Shewanella sp. ANA-3 0.47 Shewana3_3598 LysR family transcriptional regulator (RefSeq) 0.59 Shewana3_1909 carbonic anhydrase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.46 HP15_2718 transcriptional regulator, LysR family protein 0.51 HP15_2268 carbonate dehydratase low > 73
Shewanella amazonensis SB2B 0.46 Sama_2389 LysR family transcriptional regulator (RefSeq) 0.57 Sama_1642 carbonate dehydratase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.45 SO2455 transcriptional regulator, LysR family (NCBI ptt file) 0.59 SO2474 carbonic anhydrase family protein (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF4039 LysR family transcriptional regulator YafC 0.53 GFF102 Carbonic anhydrase (EC 4.2.1.1)
Klebsiella michiganensis M5al 0.43 BWI76_RS05415 LysR family transcriptional regulator 0.57 BWI76_RS04960 carbonate dehydratase low > 92
Escherichia coli ECRC62 0.42 BNILDI_09325 yafC DNA-binding transcriptional regulator YafC 0.56 BNILDI_08885 can carbonate dehydratase
Escherichia coli BL21 0.42 ECD_00201 LysR family putative transcriptional regulator 0.56 ECD_00125 carbonic anhydrase
Escherichia coli ECOR38 0.42 HEPCGN_07940 yafC DNA-binding transcriptional regulator YafC 0.56 HEPCGN_08420 can carbonate dehydratase
Escherichia coli ECRC101 0.42 MCAODC_00515 yafC DNA-binding transcriptional regulator YafC 0.56 MCAODC_00955 can carbonate dehydratase
Escherichia coli ECRC102 0.42 NIAGMN_07850 yafC DNA-binding transcriptional regulator YafC 0.56 NIAGMN_08290 can carbonate dehydratase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03453 HTH-type transcriptional regulator DmlR 0.56 OHPLBJKB_03535 Carbonic anhydrase 2
Escherichia coli BW25113 0.42 b0208 yafC predicted DNA-binding transcriptional regulator (NCBI) 0.56 b0126 can carbonic anhydrase (NCBI)
Escherichia coli ECRC99 0.42 KEDOAH_18155 yafC DNA-binding transcriptional regulator YafC 0.56 KEDOAH_17715 can carbonate dehydratase
Escherichia coli ECRC98 0.42 JDDGAC_13595 yafC DNA-binding transcriptional regulator YafC 0.56 JDDGAC_14035 can carbonate dehydratase
Escherichia coli ECOR27 0.42 NOLOHH_02345 yafC DNA-binding transcriptional regulator YafC 0.56 NOLOHH_02785 can carbonate dehydratase
Escherichia coli ECRC100 0.42 OKFHMN_10000 yafC DNA-binding transcriptional regulator YafC 0.56 OKFHMN_10440 can carbonate dehydratase
Rahnella sp. WP5 0.42 EX31_RS21220 LysR family transcriptional regulator 0.56 EX31_RS03305 carbonate dehydratase low > 89
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2687 Transcriptional regulator 0.57 EX28DRAFT_3723 Carbonic anhydrase low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_00892 HTH-type transcriptional regulator DmlR 0.57 MPMX20_00820 Carbonic anhydrase 2 low > 85
Escherichia fergusonii Becca 0.41 EFB2_03835 HTH-type transcriptional regulator DmlR 0.56 EFB2_03919 Carbonic anhydrase 2
Escherichia coli Nissle 1917 0.41 ECOLIN_RS01140 DNA-binding transcriptional regulator YafC 0.56 ECOLIN_RS00700 carbonate dehydratase
Dickeya dianthicola ME23 0.29 DZA65_RS14610 LysR family transcriptional regulator 0.57 DZA65_RS17180 carbonate dehydratase

Not shown: 16 genomes with orthologs for PfGW456L13_5137 only; 20 genomes with orthologs for PfGW456L13_1553 only