| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_2173 | | Transcriptional regulator, AraC family | 1.0 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.20 | 16 |
| Pseudomonas fluorescens SBW25 | 0.75 | PFLU_RS18330 | | AraC family transcriptional regulator | 0.97 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.75 | PFLU_RS18330 | | AraC family transcriptional regulator | 0.97 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_01425 | | AraC family transcriptional regulator | 0.97 | PS417_27835 | | endoribonuclease | low | > 88 |
| Pseudomonas sp. RS175 | 0.74 | PFR28_02003 | | HTH-type transcriptional activator RhaR | 0.98 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.74 | Pf6N2E2_83 | | transcriptional regulator, AraC family | 0.97 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.73 | AO353_28535 | | AraC family transcriptional regulator | 0.97 | AO353_09285 | | reactive intermediate/imine deaminase | low | > 101 |
| Dechlorosoma suillum PS | 0.49 | Dsui_2034 | | DNA gyrase inhibitor | 0.78 | Dsui_0312 | | endoribonuclease L-PSP, putative | — | — |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01363 | | HTH-type transcriptional activator RhaS | 0.31 | MPMX19_04018 | | 2-aminomuconate deaminase | low | > 112 |
| Shewanella loihica PV-4 | 0.47 | Shew_0371 | | AraC family transcriptional regulator (RefSeq) | 0.73 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS19395 | | AraC family transcriptional regulator | 0.43 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Rahnella sp. WP5 | 0.45 | EX31_RS13520 | | AraC family transcriptional regulator | 0.43 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF3136 | | Uncharacterized protein ygiV | 0.43 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Shewanella amazonensis SB2B | 0.41 | Sama_0076 | | transcription activator, effector binding (RefSeq) | 0.79 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS05545 | | AraC family transcriptional regulator | 0.29 | ABZR87_RS05790 | | RidA family protein | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS10040 | | AraC family transcriptional regulator | 0.37 | RALBFv3_RS20925 | | endoribonuclease L-PSP | low | > 76 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS03540 | | AraC family transcriptional regulator | 0.37 | UW163_RS22060 | | endoribonuclease L-PSP | — | — |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_02611 | | AraC-family transcriptional regulator | 0.30 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_02611 | | AraC-family transcriptional regulator | 0.30 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_23800 | | AraC family transcriptional regulator | 0.97 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS22525 | | AraC family transcriptional regulator | 0.33 | RR42_RS16710 | | endoribonuclease L-PSP | low | > 128 |
| Azospirillum brasilense Sp245 | 0.23 | AZOBR_RS00835 | | transcriptional regulator | 0.44 | AZOBR_RS32435 | | dfrA | low | > 97 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_4190 | | transcriptional regulator, AraC family | 0.98 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 87 |
| Variovorax sp. SCN45 | 0.21 | GFF3429 | | Transcriptional regulator, AraC family | 0.32 | GFF3442 | | RidA/YER057c/UK114 superfamily protein | low | > 127 |
| Bacteroides ovatus ATCC 8483 | 0.20 | BACOVA_01480 | | transcriptional regulator, effector binding domain protein | 0.46 | BACOVA_00589 | | putative endoribonuclease L-PSP | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT1904 | | transcriptional regulator, AraC-type (NCBI ptt file) | 0.46 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | low | > 81 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU0277 | | transcriptional regulator, AraC family (TIGR) | 0.48 | DVU2647 | | endoribonuclease, L-PSP family (TIGR) | low | > 55 |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS00025 | | AraC family transcriptional regulator | 0.48 | QEN71_RS41190 | | RidA family protein | — | — |
| Burkholderia phytofirmans PsJN | 0.17 | BPHYT_RS00095 | | AraC family transcriptional regulator | 0.29 | BPHYT_RS29300 | | endoribonuclease L-PSP | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.16 | Xcc-8004.1401.1 | | hypothetical protein | 0.61 | Xcc-8004.1205.1 | | hypothetical protein | low | > 74 |
| Bacteroides stercoris CC31F | 0.16 | HMPREF1181_RS07810 | | AraC family transcriptional regulator | 0.47 | HMPREF1181_RS10885 | | RidA family protein | low | > 56 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.16 | GFF4832 | | transcriptional regulator, AraC type; possible DNA gyrase inhibitor | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 90 |
| Bifidobacterium breve UCC2003 | 0.15 | BBR_RS14655 | | AraC family transcriptional regulator | 0.32 | BBR_RS12070 | | endoribonuclease L-PSP | low | > 34 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS18435 | | MDR efflux pump AcrAB transcriptional activator RobA | 0.42 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS19505 | | MDR efflux pump AcrAB transcriptional activator RobA | 0.41 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS18365 | | MDR efflux pump AcrAB transcriptional activator RobA | 0.41 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.13 | H281DRAFT_03691 | | transcriptional regulator, AraC family | 0.36 | H281DRAFT_01079 | | Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family | low | > 103 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_03005 | | MDR efflux pump AcrAB transcriptional activator RobA | 0.39 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Paraburkholderia graminis OAS925 | 0.13 | ABIE53_004566 | | AraC family transcriptional regulator | 0.27 | ABIE53_004706 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 113 |
| Pseudomonas sp. S08-1 | 0.11 | OH686_16830 | | Transcriptional regulator, AraC family | 0.93 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
Not shown: 6 genomes with orthologs for PP_2173 only; 47 genomes with orthologs for PP_5303 only