Conservation of cofitness between PP_3415 and PP_4011 in Pseudomonas putida KT2440

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3415 Transcriptional regulator, LacI family 1.0 PP_4011 isocitrate dehydrogenase, NADP(+)-specific 0.25 19
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.92 Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 87
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.92 PfGW456L13_2643 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 87
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.93 Pf6N2E2_289 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 103
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_05065 LacI family transcriptional regulator 0.93 AO356_22135 isocitrate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_03255 LacI family transcriptional regulator 0.92 AO353_27690 isocitrate dehydrogenase low > 101
Pseudomonas sp. RS175 0.66 PFR28_00593 HTH-type transcriptional regulator GntR 0.93 PFR28_02616 Isocitrate dehydrogenase [NADP] low > 88
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.93 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.93 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.66 PS417_21990 LacI family transcriptional regulator 0.93 PS417_16525 isocitrate dehydrogenase low > 88
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor 0.71 GFF4515 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.69 34
Acidovorax sp. GW101-3H11 0.55 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor 0.77 Ac3H11_2377 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 79
Castellaniella sp019104865 MT123 0.53 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator 0.78 ABCV34_RS07265 NADP-dependent isocitrate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.48 Psest_2126 Transcriptional regulators 0.91 Psest_2024 isocitrate dehydrogenase, NADP-dependent, prokaryotic type low > 67
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS00410 LacI family transcription regulator 0.78 BPHYT_RS15730 isocitrate dehydrogenase low > 109
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS05460 LacI family transcription regulator 0.76 HSERO_RS07015 isocitrate dehydrogenase low > 78
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS10090 LacI family DNA-binding transcriptional regulator 0.79 QEN71_RS02980 NADP-dependent isocitrate dehydrogenase low > 153
Dickeya dianthicola 67-19 0.32 HGI48_RS19900 gluconate operon transcriptional repressor GntR 0.78 HGI48_RS11515 NADP-dependent isocitrate dehydrogenase — —
Dickeya dianthicola ME23 0.32 DZA65_RS20970 gluconate operon transcriptional repressor GntR 0.78 DZA65_RS11850 NADP-dependent isocitrate dehydrogenase — —
Dickeya dadantii 3937 0.32 DDA3937_RS19785 gluconate operon transcriptional repressor GntR 0.78 DDA3937_RS11470 NADP-dependent isocitrate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_03425 transcriptional regulator, LacI family 0.79 H281DRAFT_04085 isocitrate dehydrogenase (NADP) — —
Paraburkholderia graminis OAS925 0.31 ABIE53_005334 LacI family gluconate utilization system Gnt-I transcriptional repressor 0.78 ABIE53_003317 isocitrate dehydrogenase low > 113
Alteromonas macleodii MIT1002 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.22 MIT1002_00983 Isocitrate dehydrogenase [NADP] low > 70
Variovorax sp. SCN45 0.31 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 0.79 GFF343 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 127
Klebsiella michiganensis M5al 0.30 BWI76_RS06150 transcriptional regulator 0.79 BWI76_RS11330 isocitrate dehydrogenase (NADP(+)) — —
Rahnella sp. WP5 0.30 EX31_RS05060 gluconate operon transcriptional repressor GntR 0.79 EX31_RS24590 NADP-dependent isocitrate dehydrogenase — —
Erwinia tracheiphila SCR3 0.30 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR 0.78 LU632_RS14560 icd NADP-dependent isocitrate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS03860 transcriptional regulator 0.79 RR42_RS17135 isocitrate dehydrogenase low > 128
Pantoea sp. MT58 0.29 IAI47_01650 gluconate operon transcriptional repressor GntR 0.79 IAI47_11900 NADP-dependent isocitrate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.29 HER17_RS16515 LacI family DNA-binding transcriptional regulator 0.78 HER17_RS11610 NADP-dependent isocitrate dehydrogenase — —
Enterobacter sp. TBS_079 0.29 MPMX20_04319 HTH-type transcriptional regulator GntR 0.78 MPMX20_01820 Isocitrate dehydrogenase [NADP] — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_4274 transcriptional regulator, LacI family 0.78 EX28DRAFT_1794 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) — —
Variovorax sp. OAS795 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator 0.80 ABID97_RS16920 NADP-dependent isocitrate dehydrogenase low > 91
Escherichia coli ECRC98 0.29 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.79 JDDGAC_06605 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia fergusonii Becca 0.29 EFB2_00382 HTH-type transcriptional regulator GntR 0.79 EFB2_02839 Isocitrate dehydrogenase [NADP] — —
Escherichia coli ECOR38 0.29 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.79 HEPCGN_24245 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC101 0.29 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.79 OKFHMN_00760 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.79 ECOLIN_RS06640 NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC101 0.29 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.79 MCAODC_22325 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC102 0.29 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.79 NIAGMN_24905 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.79 OHPLBJKB_02532 Isocitrate dehydrogenase [NADP] — —
Escherichia coli ECRC99 0.29 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.79 KEDOAH_24845 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC62 0.29 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.79 BNILDI_19050 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli BW25113 0.29 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.79 b1136 icd isocitrate dehydrogenase (NCBI) — —
Escherichia coli ECOR27 0.28 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.79 NOLOHH_20885 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli BL21 0.28 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.79 ECD_01134 isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase — —
Serratia liquefaciens MT49 0.28 IAI46_23965 gluconate operon transcriptional repressor GntR 0.80 IAI46_10460 NADP-dependent isocitrate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF406 Transcriptional regulator, LacI family 0.79 GFF3422 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) — —
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator 0.78 ABZR87_RS00460 NADP-dependent isocitrate dehydrogenase — —
Ralstonia solanacearum PSI07 0.28 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator 0.79 RPSI07_RS12425 NADP-dependent isocitrate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.27 RS_RS24865 LacI family DNA-binding transcriptional regulator 0.78 RS_RS12485 NADP-dependent isocitrate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS16125 GntR family transcriptional regulator 0.78 RALBFv3_RS04855 isocitrate dehydrogenase (NADP(+)) — —
Ralstonia solanacearum UW163 0.26 UW163_RS16860 GntR family transcriptional regulator 0.78 UW163_RS08770 isocitrate dehydrogenase (NADP(+)) — —

Not shown: 10 genomes with orthologs for PP_3415 only; 18 genomes with orthologs for PP_4011 only