Conservation of cofitness between PP_4129 and PP_1994 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.42 17
Pseudomonas sp. RS175 0.93 PFR28_02637 NADH-quinone oxidoreductase subunit L 0.78 PFR28_02817 tRNA pseudouridine synthase A — —
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas simiae WCS417 0.91 PS417_16625 NADH-quinone oxidoreductase subunit L 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_27790 NADH-quinone oxidoreductase subunit L 0.77 AO353_20660 pseudouridine synthase — —
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2623 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_22020 NADH-quinone oxidoreductase subunit L 0.76 AO356_21435 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_267 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_4030 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_3207 NADH dehydrogenase subunit L 0.78 Psyr_1662 tRNA pseudouridine synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_3207 NADH dehydrogenase subunit L 0.78 Psyr_1662 tRNA pseudouridine synthase — —
Pseudomonas sp. S08-1 0.76 OH686_00105 NADH-ubiquinone oxidoreductase chain L 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1881 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.54 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.65 38
Pectobacterium carotovorum WPP14 0.67 HER17_RS07175 NADH-quinone oxidoreductase subunit L 0.54 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli ECOR27 0.67 NOLOHH_14510 nuoL NADH-quinone oxidoreductase subunit L 0.53 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Pantoea sp. MT58 0.67 IAI47_06410 NADH-quinone oxidoreductase subunit L 0.50 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Erwinia tracheiphila SCR3 0.67 LU632_RS08015 nuoL NADH-quinone oxidoreductase subunit L 0.51 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli BL21 0.67 ECD_02203 NADH:ubiquinone oxidoreductase, membrane subunit L 0.53 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Enterobacter sp. TBS_079 0.67 MPMX20_03208 NADH-quinone oxidoreductase subunit L 0.54 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0332 proton-translocating NADH-quinone oxidoreductase, chain L 0.54 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Escherichia coli ECRC98 0.67 JDDGAC_26855 nuoL NADH-quinone oxidoreductase subunit L 0.53 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS13235 NADH-quinone oxidoreductase subunit L 0.53 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECRC101 0.67 OKFHMN_22890 nuoL NADH-quinone oxidoreductase subunit L 0.53 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.67 MCAODC_13930 nuoL NADH-quinone oxidoreductase subunit L 0.53 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.67 NIAGMN_20660 nuoL NADH-quinone oxidoreductase subunit L 0.53 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia fergusonii Becca 0.67 EFB2_01581 NADH-quinone oxidoreductase subunit L 0.53 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC99 0.67 KEDOAH_05305 nuoL NADH-quinone oxidoreductase subunit L 0.53 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01428 NADH-quinone oxidoreductase subunit L 0.53 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECOR38 0.67 HEPCGN_22095 nuoL NADH-quinone oxidoreductase subunit L 0.53 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.85 74
Rahnella sp. WP5 0.67 EX31_RS19385 NADH-quinone oxidoreductase subunit L 0.53 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Escherichia coli ECRC62 0.67 BNILDI_13430 nuoL NADH-quinone oxidoreductase subunit L 0.53 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli BW25113 0.67 b2278 nuoL NADH dehydrogenase subunit L (NCBI) 0.53 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Serratia liquefaciens MT49 0.66 IAI46_17660 NADH-quinone oxidoreductase subunit L 0.53 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Klebsiella michiganensis M5al 0.65 BWI76_RS20140 NADH-quinone oxidoreductase subunit L 0.54 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Dickeya dianthicola ME23 0.65 DZA65_RS14935 NADH-quinone oxidoreductase subunit L 0.51 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dadantii 3937 0.65 DDA3937_RS14285 NADH-quinone oxidoreductase subunit L 0.51 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dianthicola 67-19 0.65 HGI48_RS14260 NADH-quinone oxidoreductase subunit L 0.51 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Acinetobacter radioresistens SK82 0.53 MPMX26_02545 NADH-quinone oxidoreductase subunit L 0.50 MPMX26_00352 tRNA pseudouridine synthase A — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_04220 NADH-quinone oxidoreductase subunit L 0.25 CA264_17725 tRNA pseudouridine synthase A low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS23590 NADH-quinone oxidoreductase subunit L 0.22 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17115 NADH-quinone oxidoreductase subunit L 0.22 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS07220 NADH:ubiquinone oxidoreductase subunit L 0.31 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Azospirillum sp. SherDot2 0.29 MPMX19_01735 NADH-quinone oxidoreductase subunit L 0.31 MPMX19_02005 tRNA pseudouridine synthase A — —
Magnetospirillum magneticum AMB-1 0.29 AMB_RS13955 NADH-quinone oxidoreductase subunit L 0.30 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA — —
Sinorhizobium meliloti 1021 0.28 SMc01925 NADH dehydrogenase subunit L 0.30 SMc01099 tRNA pseudouridine synthase A — —
Variovorax sp. OAS795 0.28 ABID97_RS20440 NADH-quinone oxidoreductase subunit L 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA — —
Rhodospirillum rubrum S1H 0.28 Rru_A1566 NADH-plastoquinone oxidoreductase, chain 5 (NCBI) 0.31 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.28 Dshi_1327 proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) — —
Rhizobium sp. OAE497 0.26 ABIE40_RS07240 NADH-quinone oxidoreductase subunit L 0.28 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA — —
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_0698 NADH dehydrogenase subunit L (EC 1.6.5.3) 0.24 Ga0059261_0647 tRNA pseudouridine(38-40) synthase — —
Mycobacterium tuberculosis H37Rv 0.25 Rv3156 Probable NADH dehydrogenase I (chain L) NuoL (NADH-ubiquinone oxidoreductase chain L) 0.20 Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) — —
Bosea sp. OAE506 0.25 ABIE41_RS17885 NADH-quinone oxidoreductase subunit L 0.28 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS09035 NADH-quinone oxidoreductase subunit L 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA low > 56
Bacteroides ovatus ATCC 8483 0.24 BACOVA_04855 proton-translocating NADH-quinone oxidoreductase, chain L 0.25 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4060 NADH dehydrogenase I, chain L (NCBI ptt file) 0.25 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1977 ndhF1 NAD(P)H-quinone oxidoreductase subunit F 0.25 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS13300 NADH-quinone oxidoreductase subunit L 0.23 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.54 5
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS08505 NADH-quinone oxidoreductase subunit L 0.23 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72

Not shown: 1 genomes with orthologs for PP_4129 only; 42 genomes with orthologs for PP_1994 only