Conservation of cofitness between PP_5348 and PP_1988 in Pseudomonas putida KT2440

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5348 Transcriptional regulator, LysR family 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.55 17
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_10035 LysR family transcriptional regulator 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.78 5
Pseudomonas sp. RS175 0.86 PFR28_04519 HTH-type transcriptional activator CmpR 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.33 17
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12015 LysR family transcriptional regulator 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.63 32
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2009 LysR family transcriptional regulator PA5437 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.73 28
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.84 PFLU_RS29885 LysR family transcriptional regulator 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.84 PS417_28220 LysR family transcriptional regulator 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.62 11
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_727 LysR family transcriptional regulator PA5437 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.67 18
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4277 LysR family transcriptional regulator PA5437 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_5062 transcriptional regulator, LysR family 0.91 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_5062 transcriptional regulator, LysR family 0.91 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas stutzeri RCH2 0.74 Psest_4086 Transcriptional regulator 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.63 13
Pseudomonas sp. S08-1 0.71 OH686_13195 Transcriptional regulator, LysR family 0.87 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1310 cmpR ndhF3 operon transcriptional regulator 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_03013 transcriptional regulator, LysR family 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_005077 DNA-binding transcriptional LysR family regulator 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase low > 113
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS29890 LysR family transcriptional regulator 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase low > 109
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS20425 LysR family transcriptional regulator 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase low > 153
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS31340 transcriptional regulator 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Shewanella loihica PV-4 0.33 Shew_1245 LysR family transcriptional regulator (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.75 40
Rhodospirillum rubrum S1H 0.33 Rru_A2401 RuBisCO transcriptional regulator cbbR, LysR family (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) low > 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2192 Cys regulon transcriptional activator CysB 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 90
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3174 RuBisCO operon transcriptional regulator 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 79
Variovorax sp. OAS795 0.31 ABID97_RS24450 LysR family transcriptional regulator 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Dechlorosoma suillum PS 0.30 Dsui_2869 transcriptional regulator 0.68 Dsui_3198 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.28 MPMX19_02949 HTH-type transcriptional activator CmpR 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Sinorhizobium meliloti 1021 0.25 SM_b20203 transcriptional regulator 0.58 SMc04405 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_007990 LysR family transcriptional regulator 0.53 TX73_001175 3-isopropylmalate dehydrogenase — —
Shewanella amazonensis SB2B 0.24 Sama_0693 RuBisCo operon transcriptional regulator (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.23 SO3757 rbcR rubisco operon transcriptional regulator (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.41 63
Shewanella sp. ANA-3 0.22 Shewana3_0835 LysR family transcriptional regulator (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) low > 73

Not shown: 0 genomes with orthologs for PP_5348 only; 71 genomes with orthologs for PP_1988 only