Conservation of cofitness between PP_4697 and PP_1719 in Pseudomonas putida KT2440

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4697 poly(A) polymerase 1.0 PP_1719 Tail-specific protease prc 0.20 20
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.88 Pf6N2E2_5780 Periplasmic protease low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16070 poly(A) polymerase 0.89 AO356_19335 peptidase S41 low > 104
Pseudomonas simiae WCS417 0.82 PS417_23900 poly(A) polymerase 0.88 PS417_09325 peptidase S41 low > 88
Pseudomonas fluorescens SBW25 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.88 PFLU_RS09980 peptidase S41 0.51 69
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.88 PFLU_RS09980 peptidase S41 0.24 79
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.89 PfGW456L13_4207 Periplasmic protease low > 87
Pseudomonas sp. RS175 0.82 PFR28_03719 Poly(A) polymerase I 0.89 PFR28_03169 Tail-specific protease low > 88
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_14395 poly(A) polymerase 0.88 AO353_02440 peptidase S41 low > 101
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0830 Poly(A) polymerase 0.86 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0830 Poly(A) polymerase 0.86 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A low > 86
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.88 Pf1N1B4_3741 Periplasmic protease — —
Pseudomonas sp. S08-1 0.71 OH686_17255 Poly(A) polymerase 0.75 OH686_19710 Tail-specific protease precursor low > 80
Pseudomonas stutzeri RCH2 0.70 Psest_0998 poly(A) polymerase 0.75 Psest_2951 C-terminal peptidase (prc) — —
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.47 HP15_1231 periplasmic tail-specific proteinase — —
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.36 CSW01_07515 tail-specific protease low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_03692 Poly(A) polymerase I precursor 0.34 MIT1002_02025 Tail-specific protease precursor low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.35 Shewana3_1778 carboxy-terminal protease (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0058 poly(A) polymerase 0.39 B158DRAFT_1732 C-terminal peptidase (prc) low > 40
Serratia liquefaciens MT49 0.43 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.34 IAI46_10800 carboxy terminal-processing peptidase low > 86
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.35 Sama_1585 carboxy-terminal protease (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.35 SO2601 carboxyl-terminal protease (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_3131 poly(A) polymerase (RefSeq) 0.36 Shew_1802 carboxy-terminal protease (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.35 Xcc-8004.914.1 tail-specific protease low > 74
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.35 DDA3937_RS11965 carboxy terminal-processing peptidase low > 74
Enterobacter sp. TBS_079 0.42 MPMX20_00829 Poly(A) polymerase I 0.33 MPMX20_02737 Tail-specific protease low > 85
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3732 poly(A) polymerase 0.33 EX28DRAFT_0726 C-terminal peptidase (prc) low > 76
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.35 DZA65_RS12505 carboxy terminal-processing peptidase 0.46 9
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.34 BWI76_RS17975 tail-specific protease low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.34 GFF2845 Tail-specific protease precursor (EC 3.4.21.102) low > 78
Dickeya dianthicola 67-19 0.41 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.35 HGI48_RS12055 carboxy terminal-processing peptidase low > 71
Pantoea sp. MT58 0.41 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.34 IAI47_08705 carboxy terminal-processing peptidase low > 76
Escherichia coli ECRC101 0.41 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.35 OKFHMN_26465 prc carboxy terminal-processing peptidase — —
Escherichia coli ECRC62 0.41 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.35 BNILDI_15770 prc carboxy terminal-processing peptidase — —
Escherichia coli ECOR38 0.41 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.35 HEPCGN_04865 prc carboxy terminal-processing peptidase low > 85
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.38 OKGIIK_00110 ctpA C-terminal processing protease CtpA/Prc, contains a PDZ domain low > 52
Escherichia coli ECRC98 0.41 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.35 JDDGAC_01040 prc carboxy terminal-processing peptidase — —
Escherichia coli BW25113 0.41 b0143 pcnB poly(A) polymerase I (VIMSS) 0.35 b1830 prc carboxy-terminal protease for penicillin-binding protein 3 (NCBI) low > 76
Escherichia coli ECOR27 0.41 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.35 NOLOHH_16975 prc carboxy terminal-processing peptidase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_03519 Poly(A) polymerase I 0.35 OHPLBJKB_01901 Tail-specific protease low > 73
Escherichia coli ECRC102 0.41 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.35 NIAGMN_01595 prc carboxy terminal-processing peptidase — —
Escherichia coli BL21 0.41 ECD_00142 poly(A) polymerase 0.35 ECD_01801 carboxy-terminal protease for penicillin-binding protein 3 low > 60
Escherichia coli ECRC99 0.41 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.35 KEDOAH_01640 prc carboxy terminal-processing peptidase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.38 LRK55_RS06215 carboxy terminal-processing peptidase low > 63
Escherichia fergusonii Becca 0.41 EFB2_03901 Poly(A) polymerase I 0.34 EFB2_02171 Tail-specific protease low > 86
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.38 LRK54_RS06470 carboxy terminal-processing peptidase low > 59
Escherichia coli ECRC101 0.41 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.35 MCAODC_18940 prc carboxy terminal-processing peptidase — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.35 ECOLIN_RS10190 carboxy terminal-processing peptidase — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.34 HER17_RS11690 carboxy terminal-processing peptidase low > 75
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.39 ABZR86_RS17510 carboxy terminal-processing peptidase low > 74
Erwinia tracheiphila SCR3 0.39 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.32 LU632_RS13250 prc carboxy terminal-processing peptidase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00543 Poly(A) polymerase I 0.29 MPMX26_00421 Tail-specific protease low > 36

Not shown: 15 genomes with orthologs for PP_4697 only; 5 genomes with orthologs for PP_1719 only