Conservation of cofitness between PP_0127 and PP_1719 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0127 Thiol:disulfide interchange protein 1.0 PP_1719 Tail-specific protease prc 0.27 16
Pseudomonas fluorescens SBW25 0.84 PFLU_RS00415 thiol:disulfide interchange protein DsbA/DsbL 0.88 PFLU_RS09980 peptidase S41 0.51 77
Pseudomonas simiae WCS417 0.84 PS417_00425 thiol:disulfide interchange protein 0.88 PS417_09325 peptidase S41 — —
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS00415 thiol:disulfide interchange protein DsbA/DsbL 0.88 PFLU_RS09980 peptidase S41 0.26 55
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_1879 Periplasmic thiol:disulfide interchange protein DsbA 0.88 Pf1N1B4_3741 Periplasmic protease — —
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_11445 thiol:disulfide interchange protein 0.89 AO356_19335 peptidase S41 — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4158 Periplasmic thiol:disulfide interchange protein DsbA 0.88 Pf6N2E2_5780 Periplasmic protease — —
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_590 Periplasmic thiol:disulfide interchange protein DsbA 0.89 PfGW456L13_4207 Periplasmic protease — —
Pseudomonas sp. RS175 0.80 PFR28_04628 Thiol:disulfide interchange protein DsbA 0.89 PFR28_03169 Tail-specific protease low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_0268 DSBA oxidoreductase 0.86 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A — —
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_0268 DSBA oxidoreductase 0.86 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A low > 86
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_10950 thiol:disulfide interchange protein 0.88 AO353_02440 peptidase S41 low > 101
Pseudomonas sp. S08-1 0.70 OH686_12195 Periplasmic thiol:disulfide interchange protein DsbA 0.75 OH686_19710 Tail-specific protease precursor low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0186 Protein-disulfide isomerase 0.75 Psest_2951 C-terminal peptidase (prc) — —
Acinetobacter radioresistens SK82 0.42 MPMX26_00035 Thiol:disulfide interchange protein DsbA 0.29 MPMX26_00421 Tail-specific protease low > 36
Marinobacter adhaerens HP15 0.40 HP15_3325 DSBA oxidoreductase 0.47 HP15_1231 periplasmic tail-specific proteinase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS12725 thiol:disulfide interchange protein DsbA/DsbL 0.39 ABZR86_RS17510 carboxy terminal-processing peptidase low > 74
Rhodanobacter denitrificans MT42 0.28 LRK55_RS06960 thiol:disulfide interchange protein DsbA/DsbL 0.38 LRK55_RS06215 carboxy terminal-processing peptidase low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS07225 thiol:disulfide interchange protein DsbA/DsbL 0.38 LRK54_RS06470 carboxy terminal-processing peptidase low > 59
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_0392 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 0.39 B158DRAFT_1732 C-terminal peptidase (prc) low > 40
Shewanella oneidensis MR-1 0.22 SO0333 dsbA thiol:disulfide interchange protein DsbA (NCBI ptt file) 0.35 SO2601 carboxyl-terminal protease (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.22 Shewana3_3838 DSBA oxidoreductase (RefSeq) 0.35 Shewana3_1778 carboxy-terminal protease (RefSeq) 0.38 23
Shewanella loihica PV-4 0.21 Shew_0265 DSBA oxidoreductase (RefSeq) 0.36 Shew_1802 carboxy-terminal protease (RefSeq) 0.38 21
Klebsiella michiganensis M5al 0.21 BWI76_RS00345 protein disulfide oxidoreductase DsbA 0.34 BWI76_RS17975 tail-specific protease low > 92
Shewanella amazonensis SB2B 0.20 Sama_3321 thiol:disulfide interchange protein DsbA (RefSeq) 0.35 Sama_1585 carboxy-terminal protease (RefSeq) 0.53 8
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4341 Protein-disulfide isomerase 0.33 EX28DRAFT_0726 C-terminal peptidase (prc) low > 76
Rahnella sp. WP5 0.20 EX31_RS15910 thiol:disulfide interchange protein DsbA 0.32 EX31_RS24880 carboxy terminal-processing peptidase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF2213 Periplasmic thiol:disulfide interchange protein DsbA 0.34 GFF2845 Tail-specific protease precursor (EC 3.4.21.102) low > 78
Vibrio cholerae E7946 ATCC 55056 0.20 CSW01_00170 thiol:disulfide interchange protein DsbA 0.36 CSW01_07515 tail-specific protease low > 62
Enterobacter sp. TBS_079 0.20 MPMX20_04603 Thiol:disulfide interchange protein DsbA 0.33 MPMX20_02737 Tail-specific protease — —
Pantoea sp. MT58 0.20 IAI47_00425 thiol:disulfide interchange protein DsbA 0.34 IAI47_08705 carboxy terminal-processing peptidase — —
Escherichia coli ECRC98 0.19 JDDGAC_17795 dsbA thiol:disulfide interchange protein DsbA 0.35 JDDGAC_01040 prc carboxy terminal-processing peptidase — —
Escherichia coli Nissle 1917 0.19 ECOLIN_RS22250 thiol:disulfide interchange protein DsbA 0.35 ECOLIN_RS10190 carboxy terminal-processing peptidase — —
Escherichia fergusonii Becca 0.19 EFB2_04757 Thiol:disulfide interchange protein DsbA 0.34 EFB2_02171 Tail-specific protease low > 86
Escherichia coli BL21 0.19 ECD_03746 periplasmic protein disulfide isomerase I 0.35 ECD_01801 carboxy-terminal protease for penicillin-binding protein 3 low > 60
Escherichia coli ECRC62 0.19 BNILDI_05230 dsbA thiol:disulfide interchange protein DsbA 0.35 BNILDI_15770 prc carboxy terminal-processing peptidase — —
Escherichia coli ECRC99 0.19 KEDOAH_13980 dsbA thiol:disulfide interchange protein DsbA 0.35 KEDOAH_01640 prc carboxy terminal-processing peptidase — —
Escherichia coli ECRC102 0.19 NIAGMN_11925 dsbA thiol:disulfide interchange protein DsbA 0.35 NIAGMN_01595 prc carboxy terminal-processing peptidase — —
Escherichia coli ECRC101 0.19 MCAODC_04670 dsbA thiol:disulfide interchange protein DsbA 0.35 MCAODC_18940 prc carboxy terminal-processing peptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_04193 Thiol:disulfide interchange protein DsbA 0.35 OHPLBJKB_01901 Tail-specific protease low > 73
Escherichia coli ECOR27 0.19 NOLOHH_06300 dsbA thiol:disulfide interchange protein DsbA 0.35 NOLOHH_16975 prc carboxy terminal-processing peptidase — —
Escherichia coli ECOR38 0.19 HEPCGN_12805 dsbA thiol:disulfide interchange protein DsbA 0.35 HEPCGN_04865 prc carboxy terminal-processing peptidase low > 85
Escherichia coli ECRC101 0.19 OKFHMN_14170 dsbA thiol:disulfide interchange protein DsbA 0.35 OKFHMN_26465 prc carboxy terminal-processing peptidase — —
Escherichia coli BW25113 0.19 b3860 dsbA periplasmic protein disulfide isomerase I (NCBI) 0.35 b1830 prc carboxy-terminal protease for penicillin-binding protein 3 (NCBI) low > 76
Alteromonas macleodii MIT1002 0.18 MIT1002_00714 Thiol:disulfide interchange protein DsbA precursor 0.34 MIT1002_02025 Tail-specific protease precursor — —
Dickeya dadantii 3937 0.18 DDA3937_RS00100 thiol:disulfide interchange protein DsbA 0.35 DDA3937_RS11965 carboxy terminal-processing peptidase low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS22240 thiol:disulfide interchange protein DsbA 0.35 DZA65_RS12505 carboxy terminal-processing peptidase low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS21265 thiol:disulfide interchange protein DsbA 0.35 HGI48_RS12055 carboxy terminal-processing peptidase low > 71

Not shown: 17 genomes with orthologs for PP_0127 only; 9 genomes with orthologs for PP_1719 only