Conservation of cofitness between PP_5033 and PP_1063 in Pseudomonas putida KT2440

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5033 Urocanate hydratase 1.0 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding 0.15 16
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_326 Urocanate hydratase (EC 4.2.1.49) (from data) 0.95 PfGW456L13_4778 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1587 Urocanate hydratase (EC 4.2.1.49) (from data) 0.95 Pf1N1B4_784 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_12250 Urocanate hydratase (EC 4.2.1.49) (from data) 0.95 AO353_16210 XRE family transcriptional regulator 0.28 17
Pseudomonas sp. S08-1 0.93 OH686_16745 urocanate hydratase 0.90 OH686_20465 Transcriptional activator MetR low > 80
Pseudomonas sp. RS175 0.93 PFR28_04965 Urocanate hydratase 0.96 PFR28_03478 HTH-type transcriptional regulator MetR low > 88
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3805 Urocanate hydratase (EC 4.2.1.49) (from data) 0.95 Pf6N2E2_5471 Transcriptional activator MetR low > 103
Cupriavidus basilensis FW507-4G11 0.92 RR42_RS14645 urocanate hydratase 0.46 RR42_RS30655 LysR family transcriptional regulator low > 128
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_09630 Urocanate hydratase (EC 4.2.1.49) (from data) 0.95 AO356_17735 XRE family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS01775 urocanate hydratase 0.95 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.92 PFLU_RS01775 urocanate hydratase 0.95 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.92 PS417_01720 Urocanate hydratase (EC 4.2.1.49) (from data) 0.94 PS417_05455 XRE family transcriptional regulator low > 88
Serratia liquefaciens MT49 0.91 IAI46_03665 urocanate hydratase 0.44 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4828 urocanate hydratase 0.94 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4828 urocanate hydratase 0.94 Psyr_3917 transcriptional regulator, LysR family low > 86
Enterobacter asburiae PDN3 0.87 EX28DRAFT_2220 urocanate hydratase (EC 4.2.1.49) 0.45 EX28DRAFT_4493 Transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.87 MPMX20_01399 Urocanate hydratase 0.46 MPMX20_04452 HTH-type transcriptional regulator MetR low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS08735 Urocanate hydratase (EC 4.2.1.49) (from data) 0.42 BWI76_RS01275 LysR family transcriptional regulator low > 92
Ralstonia solanacearum PSI07 0.77 RPSI07_RS11910 urocanate hydratase 0.47 RPSI07_RS02550 LysR family transcriptional regulator low > 81
Variovorax sp. OAS795 0.76 ABID97_RS03425 urocanate hydratase 0.47 ABID97_RS19400 LysR family transcriptional regulator — —
Acidovorax sp. GW101-3H11 0.76 Ac3H11_2557 Urocanate hydratase (EC 4.2.1.49) (from data) 0.51 Ac3H11_2344 Transcriptional activator MetR low > 79
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_06085 urocanate hydratase 0.51 CSW01_08580 HTH-type transcriptional regulator MetR low > 62
Ralstonia solanacearum GMI1000 0.75 RS_RS13255 urocanate hydratase 0.46 RS_RS20365 LysR family transcriptional regulator low > 80
Ralstonia solanacearum UW163 0.75 UW163_RS08230 urocanate hydratase 0.47 UW163_RS18860 LysR family transcriptional regulator — —
Shewanella loihica PV-4 0.75 Shew_3757 urocanate hydratase (RefSeq) 0.40 Shew_2987 LysR family transcriptional regulator (RefSeq) low > 60
Ralstonia solanacearum IBSBF1503 0.75 RALBFv3_RS05395 urocanate hydratase 0.47 RALBFv3_RS20315 LysR family transcriptional regulator low > 76
Azospirillum sp. SherDot2 0.75 MPMX19_04936 Urocanate hydratase 0.37 MPMX19_00645 HTH-type transcriptional regulator MetR low > 112
Escherichia coli ECOR38 0.75 HEPCGN_01335 hutU urocanate hydratase 0.45 HEPCGN_13030 metR HTH-type transcriptional regulator MetR low > 85
Rahnella sp. WP5 0.75 EX31_RS06760 urocanate hydratase 0.43 EX31_RS25370 HTH-type transcriptional regulator MetR low > 89
Pantoea sp. MT58 0.74 IAI47_13280 urocanate hydratase 0.43 IAI47_18315 HTH-type transcriptional regulator MetR low > 76
Shewanella oneidensis MR-1 0.74 SO0097 hutU urocanate hydratase (NCBI ptt file) 0.41 SO0817 metR transcriptional activator protein MetR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.74 Shewana3_0100 urocanate hydratase (RefSeq) 0.41 Shewana3_3470 LysR family transcriptional regulator (RefSeq) low > 73
Castellaniella sp019104865 MT123 0.73 ABCV34_RS12785 urocanate hydratase 0.56 ABCV34_RS04450 LysR substrate-binding domain-containing protein low > 48
Dickeya dianthicola ME23 0.72 DZA65_RS15830 urocanate hydratase 0.43 DZA65_RS00870 HTH-type transcriptional regulator MetR low > 75
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS07565 urocanate hydratase 0.46 BPHYT_RS26650 LysR family transcriptional regulator — —
Shewanella amazonensis SB2B 0.27 Sama_1632 Urocanate hydratase (EC 4.2.1.49) (from data) 0.40 Sama_2628 transcriptional activator protein MetR (RefSeq) low > 62

Not shown: 29 genomes with orthologs for PP_5033 only; 17 genomes with orthologs for PP_1063 only