Conservation of cofitness between PP_4475 and PP_0832 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4475 succinylglutamate desuccinylase 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 12
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_02995 succinylglutamate desuccinylase 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 101
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_5671 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.27 67
Pseudomonas sp. RS175 0.78 PFR28_03277 Succinylglutamate desuccinylase 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas fluorescens SBW25 0.78 PFLU_RS23285 succinylglutamate desuccinylase 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_18755 succinylglutamate desuccinylase 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS23285 succinylglutamate desuccinylase 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_1977 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas simiae WCS417 0.77 PS417_21680 succinylglutamate desuccinylase 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_3447 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas sp. S08-1 0.74 OH686_21320 succinylglutamate desuccinylase 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3559 succinylglutamate desuccinylase 0.89 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3559 succinylglutamate desuccinylase 0.89 Psyr_1227 Queuosine biosynthesis protein 0.33 74
Pseudomonas stutzeri RCH2 0.45 Psest_2717 Succinylglutamate desuccinylase 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Shewanella oneidensis MR-1 0.35 SO2338 astE succinylglutamate desuccinylase (NCBI ptt file) 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.35 Shewana3_2132 succinylglutamate desuccinylase (RefSeq) 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.35 Sama_1708 succinylglutamate desuccinylase (RefSeq) 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.51 1
Alteromonas macleodii MIT1002 0.35 MIT1002_01538 Succinylglutamate desuccinylase 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06483 succinylglutamate desuccinylase 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Acinetobacter radioresistens SK82 0.34 MPMX26_02247 Succinylglutamate desuccinylase 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Paraburkholderia graminis OAS925 0.33 ABIE53_001774 succinylglutamate desuccinylase 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.26 40
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS23350 succinylglutamate desuccinylase 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS07720 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Enterobacter asburiae PDN3 0.32 EX28DRAFT_1748 succinylglutamate desuccinylase (EC 3.5.1.96) 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Shewanella loihica PV-4 0.32 Shew_1924 succinylglutamate desuccinylase (RefSeq) 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_1551 succinylglutamate desuccinylase (EC 3.5.1.96) 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Escherichia coli ECRC101 0.31 OKFHMN_26925 astE succinylglutamate desuccinylase 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC99 0.31 KEDOAH_01185 astE succinylglutamate desuccinylase 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC101 0.31 MCAODC_18485 astE succinylglutamate desuccinylase 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC98 0.31 JDDGAC_01500 astE succinylglutamate desuccinylase 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Enterobacter sp. TBS_079 0.31 MPMX20_01869 Succinylglutamate desuccinylase 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Escherichia coli ECRC102 0.31 NIAGMN_01140 astE succinylglutamate desuccinylase 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BW25113 0.31 b1744 astE succinylglutamate desuccinylase (NCBI) 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Escherichia coli ECOR27 0.31 NOLOHH_17440 astE succinylglutamate desuccinylase 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_01988 Succinylglutamate desuccinylase 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli BL21 0.31 ECD_01713 succinylglutamate desuccinylase 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3496 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Escherichia fergusonii Becca 0.31 EFB2_02249 Succinylglutamate desuccinylase 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS09725 succinylglutamate desuccinylase 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Serratia liquefaciens MT49 0.31 IAI46_15315 succinylglutamate desuccinylase 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Escherichia coli ECRC62 0.31 BNILDI_16225 astE succinylglutamate desuccinylase 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Marinobacter adhaerens HP15 0.31 HP15_3034 succinylglutamate desuccinylase 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 11
Escherichia coli ECOR38 0.31 HEPCGN_05290 astE succinylglutamate desuccinylase 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 85
Rahnella sp. WP5 0.29 EX31_RS17390 succinylglutamate desuccinylase 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Klebsiella michiganensis M5al 0.29 BWI76_RS11690 succinylglutamate desuccinylase 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Pantoea sp. MT58 0.28 IAI47_11075 succinylglutamate desuccinylase 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_06280 succinylglutamate desuccinylase 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62

Not shown: 0 genomes with orthologs for PP_4475 only; 53 genomes with orthologs for PP_0832 only