Conservation of cofitness between PP_4475 and PP_0123 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4475 succinylglutamate desuccinylase 1.0 PP_0123 DNA polymerase I, 5 0.42 7
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_02995 succinylglutamate desuccinylase 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_5671 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas sp. RS175 0.78 PFR28_03277 Succinylglutamate desuccinylase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS23285 succinylglutamate desuccinylase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_18755 succinylglutamate desuccinylase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens SBW25 0.78 PFLU_RS23285 succinylglutamate desuccinylase 0.77 PFLU_RS00395 DNA polymerase I 0.60 81
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_1977 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.23 52
Pseudomonas simiae WCS417 0.77 PS417_21680 succinylglutamate desuccinylase 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_3447 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas sp. S08-1 0.74 OH686_21320 succinylglutamate desuccinylase 0.77 OH686_12215 DNA polymerase I — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3559 succinylglutamate desuccinylase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3559 succinylglutamate desuccinylase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas stutzeri RCH2 0.45 Psest_2717 Succinylglutamate desuccinylase 0.77 Psest_4219 DNA polymerase I low > 67
Shewanella oneidensis MR-1 0.35 SO2338 astE succinylglutamate desuccinylase (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.35 Shewana3_2132 succinylglutamate desuccinylase (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Alteromonas macleodii MIT1002 0.35 MIT1002_01538 Succinylglutamate desuccinylase 0.62 MIT1002_00014 DNA polymerase I — —
Shewanella amazonensis SB2B 0.35 Sama_1708 succinylglutamate desuccinylase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06483 succinylglutamate desuccinylase 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Acinetobacter radioresistens SK82 0.34 MPMX26_02247 Succinylglutamate desuccinylase 0.48 MPMX26_00574 DNA polymerase I low > 36
Paraburkholderia graminis OAS925 0.33 ABIE53_001774 succinylglutamate desuccinylase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS07720 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS23350 succinylglutamate desuccinylase 0.52 QEN71_RS17885 DNA polymerase I — —
Shewanella loihica PV-4 0.32 Shew_1924 succinylglutamate desuccinylase (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) — —
Enterobacter asburiae PDN3 0.32 EX28DRAFT_1748 succinylglutamate desuccinylase (EC 3.5.1.96) 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_1551 succinylglutamate desuccinylase (EC 3.5.1.96) 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli ECRC101 0.31 MCAODC_18485 astE succinylglutamate desuccinylase 0.61 MCAODC_04650 polA DNA polymerase I — —
Enterobacter sp. TBS_079 0.31 MPMX20_01869 Succinylglutamate desuccinylase 0.60 MPMX20_04601 DNA polymerase I low > 85
Escherichia coli ECRC101 0.31 OKFHMN_26925 astE succinylglutamate desuccinylase 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.31 NIAGMN_01140 astE succinylglutamate desuccinylase 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC99 0.31 KEDOAH_01185 astE succinylglutamate desuccinylase 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC98 0.31 JDDGAC_01500 astE succinylglutamate desuccinylase 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli BW25113 0.31 b1744 astE succinylglutamate desuccinylase (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli BL21 0.31 ECD_01713 succinylglutamate desuccinylase 0.61 ECD_03749 5 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3496 Succinylglutamate desuccinylase (EC 3.5.1.96) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli ECOR27 0.31 NOLOHH_17440 astE succinylglutamate desuccinylase 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_01988 Succinylglutamate desuccinylase 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia fergusonii Becca 0.31 EFB2_02249 Succinylglutamate desuccinylase 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS09725 succinylglutamate desuccinylase 0.61 ECOLIN_RS22270 DNA polymerase I — —
Serratia liquefaciens MT49 0.31 IAI46_15315 succinylglutamate desuccinylase 0.60 IAI46_24985 DNA polymerase I low > 86
Marinobacter adhaerens HP15 0.31 HP15_3034 succinylglutamate desuccinylase 0.56 HP15_293 DNA polymerase I low > 73
Escherichia coli ECRC62 0.31 BNILDI_16225 astE succinylglutamate desuccinylase 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR38 0.31 HEPCGN_05290 astE succinylglutamate desuccinylase 0.61 HEPCGN_12785 polA DNA polymerase I — —
Rahnella sp. WP5 0.29 EX31_RS17390 succinylglutamate desuccinylase 0.61 EX31_RS15905 DNA polymerase I low > 89
Klebsiella michiganensis M5al 0.29 BWI76_RS11690 succinylglutamate desuccinylase 0.59 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.28 IAI47_11075 succinylglutamate desuccinylase 0.60 IAI47_00430 DNA polymerase I low > 76
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_06280 succinylglutamate desuccinylase 0.61 CSW01_00560 DNA polymerase I low > 62

Not shown: 0 genomes with orthologs for PP_4475 only; 51 genomes with orthologs for PP_0123 only