Conservation of cofitness between OKFHMN_13315 and OKFHMN_22660 in Escherichia coli ECRC100

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC100 1.0 OKFHMN_13315 purD Phosphoribosylamine--glycine ligase 1.0 OKFHMN_22660 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.94 7
Escherichia coli ECRC101 1.00 MCAODC_03815 purD Phosphoribosylamine--glycine ligase 1.00 MCAODC_13700 pdxB 4-phosphoerythronate dehydrogenase PdxB low > 87
Escherichia coli ECRC102 1.00 NIAGMN_11065 purD Phosphoribosylamine--glycine ligase 1.00 NIAGMN_20435 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC99 1.00 KEDOAH_14845 purD Phosphoribosylamine--glycine ligase 1.00 KEDOAH_05535 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC98 1.00 JDDGAC_16940 purD Phosphoribosylamine--glycine ligase 1.00 JDDGAC_26620 pdxB 4-phosphoerythronate dehydrogenase PdxB low > 86
Escherichia coli ECRC62 0.99 BNILDI_06060 purD Phosphoribosylamine--glycine ligase 0.99 BNILDI_13215 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.95 8
Escherichia coli Nissle 1917 0.99 ECOLIN_RS23095 phosphoribosylamine--glycine ligase 0.99 ECOLIN_RS13445 4-phosphoerythronate dehydrogenase PdxB 0.89 5
Escherichia fergusonii Becca 0.99 EFB2_04605 Phosphoribosylamine--glycine ligase 0.98 EFB2_01538 Erythronate-4-phosphate dehydrogenase low > 86
Escherichia coli ECOR27 0.99 NOLOHH_05460 purD Phosphoribosylamine--glycine ligase 0.99 NOLOHH_14295 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.84 34
Escherichia coli ECOR38 0.99 HEPCGN_11955 purD Phosphoribosylamine--glycine ligase 0.95 HEPCGN_21865 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.95 8
Escherichia coli BL21 0.99 ECD_03882 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase 0.98 ECD_02245 erythronate-4-phosphate dehydrogenase 0.73 21
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04044 Phosphoribosylamine--glycine ligase 0.99 OHPLBJKB_01385 Erythronate-4-phosphate dehydrogenase low > 73
Escherichia coli BW25113 0.98 b4005 purD phosphoribosylamine--glycine ligase (NCBI) 0.98 b2320 pdxB erythronate-4-phosphate dehydrogenase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4187 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.88 GFF1936 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS01610 phosphoribosylamine--glycine ligase 0.82 BWI76_RS20390 erythronate-4-phosphate dehydrogenase low > 92
Enterobacter sp. TBS_079 0.92 MPMX20_00225 Phosphoribosylamine--glycine ligase 0.83 MPMX20_03255 Erythronate-4-phosphate dehydrogenase low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4544 phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.84 EX28DRAFT_0284 Phosphoglycerate dehydrogenase and related dehydrogenases 0.62 1
Pantoea sp. MT58 0.84 IAI47_18045 phosphoribosylamine--glycine ligase 0.74 IAI47_06235 4-phosphoerythronate dehydrogenase PdxB 0.71 69
Dickeya dadantii 3937 0.83 DDA3937_RS01215 phosphoribosylamine--glycine ligase 0.72 DDA3937_RS14475 4-phosphoerythronate dehydrogenase PdxB low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS01255 phosphoribosylamine--glycine ligase 0.71 DZA65_RS15380 4-phosphoerythronate dehydrogenase PdxB low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS01210 phosphoribosylamine--glycine ligase 0.68 HGI48_RS14445 4-phosphoerythronate dehydrogenase PdxB low > 71
Rahnella sp. WP5 0.82 EX31_RS16855 phosphoribosylamine--glycine ligase 0.71 EX31_RS19610 4-phosphoerythronate dehydrogenase PdxB 0.78 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS20340 phosphoribosylamine--glycine ligase 0.68 HER17_RS06980 4-phosphoerythronate dehydrogenase PdxB low > 75
Erwinia tracheiphila SCR3 0.81 LU632_RS01015 purD phosphoribosylamine--glycine ligase 0.72 LU632_RS07815 DUF3410 domain-containing protein — —
Serratia liquefaciens MT49 0.81 IAI46_01360 phosphoribosylamine--glycine ligase 0.70 IAI46_17850 4-phosphoerythronate dehydrogenase PdxB low > 86
Vibrio cholerae E7946 ATCC 55056 0.78 CSW01_01415 phosphoribosylamine--glycine ligase 0.48 CSW01_10525 DUF3410 domain-containing protein — —
Marinobacter adhaerens HP15 0.74 HP15_3228 phosphoribosylamine-glycine ligase 0.35 HP15_2098 erythronate-4-phosphate dehydrogenase — —
Pseudomonas putida KT2440 0.74 PP_4823 Phosphoribosylamine--glycine ligase 0.38 PP_2117 Erythronate-4-phosphate dehydrogenase — —
Pseudomonas sp. RS175 0.73 PFR28_05213 Phosphoribosylamine--glycine ligase 0.38 PFR28_01103 Erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_3520 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.38 Pf6N2E2_2297 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_4407 phosphoribosylamine--glycine ligase 0.44 Psyr_1828 4-phosphoerythronate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_4407 phosphoribosylamine--glycine ligase 0.44 Psyr_1828 4-phosphoerythronate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_08230 phosphoribosylamine--glycine ligase 0.38 AO356_02365 erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.73 PFLU_RS03010 phosphoribosylamine--glycine ligase 0.39 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB — —
Pseudomonas stutzeri RCH2 0.73 Psest_1013 phosphoribosylamine--glycine ligase 0.37 Psest_2548 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_13645 phosphoribosylamine--glycine ligase 0.40 AO353_00545 erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS03010 phosphoribosylamine--glycine ligase 0.39 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB — —
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1316 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.40 Pf1N1B4_3893 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas sp. S08-1 0.73 OH686_07625 Phosphoribosylamine--glycine ligase 0.37 OH686_02070 Erythronate-4-phosphate dehydrogenase — —
Alteromonas macleodii MIT1002 0.73 MIT1002_03961 Phosphoribosylamine--glycine ligase 0.30 MIT1002_02532 Erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_58 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.40 PfGW456L13_4048 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas simiae WCS417 0.72 PS417_02935 phosphoribosylamine--glycine ligase 0.40 PS417_07535 erythronate-4-phosphate dehydrogenase — —
Shewanella amazonensis SB2B 0.72 Sama_0394 phosphoribosylamine--glycine ligase (RefSeq) 0.41 Sama_2153 erythronate-4-phosphate dehydrogenase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0167 phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.40 B158DRAFT_1308 4-phosphoerythronate dehydrogenase (EC 1.1.1.290) — —
Shewanella sp. ANA-3 0.70 Shewana3_0440 phosphoribosylamine--glycine ligase (RefSeq) 0.42 Shewana3_1476 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq) — —
Shewanella oneidensis MR-1 0.69 SO0441 purD phosphoribosylamine--glycine ligase (NCBI ptt file) 0.42 SO3071 pdxB erythronate-4-phosphate dehydrogenase (NCBI ptt file) — —
Shewanella loihica PV-4 0.67 Shew_3413 phosphoribosylamine--glycine ligase (RefSeq) 0.42 Shew_2309 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) — —
Acinetobacter radioresistens SK82 0.65 MPMX26_01140 Phosphoribosylamine--glycine ligase 0.30 MPMX26_02238 Erythronate-4-phosphate dehydrogenase low > 36
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS06805 phosphoribosylamine--glycine ligase 0.32 HMPREF1078_RS19150 4-phosphoerythronate dehydrogenase PdxB low > 61
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS01580 phosphoribosylamine--glycine ligase 0.35 HMPREF1181_RS02440 4-phosphoerythronate dehydrogenase PdxB — —
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS10995 phosphoribosylamine--glycine ligase 0.34 HMPREF1058_RS10820 4-phosphoerythronate dehydrogenase PdxB low > 67
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS06055 phosphoribosylamine--glycine ligase 0.34 ABI39_RS06250 4-phosphoerythronate dehydrogenase PdxB 0.65 45
Bacteroides thetaiotaomicron VPI-5482 0.43 BT3253 phosphoribosylamine--glycine ligase (NCBI ptt file) 0.33 BT3361 erythronate-4-phosphate dehydrogenase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.43 BACOVA_01348 phosphoribosylamine--glycine ligase 0.33 BACOVA_01953 4-phosphoerythronate dehydrogenase 0.72 76

Not shown: 50 genomes with orthologs for OKFHMN_13315 only; 0 genomes with orthologs for OKFHMN_22660 only