| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_04415 | | Vitamin B12 import ATP-binding protein BtuD | 1.0 | MPMX19_04419 | | Periplasmic dipeptide transport protein | 0.85 | 2 |
| Azospirillum brasilense Sp245 | 0.85 | AZOBR_RS21780 | | peptide ABC transporter ATP-binding protein | 0.83 | AZOBR_RS21760 | | peptide ABC transporter substrate-binding protein | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.66 | Psyr_4242 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | 0.51 | Psyr_4236 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.66 | Psyr_4242 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | 0.51 | Psyr_4236 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_07275 | | peptide ABC transporter ATP-binding protein | 0.51 | AO356_07240 | | peptide ABC transporter substrate-binding protein | 0.73 | 4 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_5058 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | 0.51 | PfGW456L13_5051 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.86 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.65 | AO353_05410 | | peptide ABC transporter ATP-binding protein | 0.51 | AO353_05375 | | peptide ABC transporter substrate-binding protein | 0.80 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_1127 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | 0.51 | Pf1N1B4_1120 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas segetis P6 | 0.64 | ACVTMO_RS19275 | | peptide ABC transporter ATP-binding protein | 0.54 | ACVTMO_RS19250 | | ABC transporter substrate-binding protein | low | > 75 |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_3314 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | 0.50 | Pf6N2E2_3308 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 103 |
| Pseudomonas putida KT2440 | 0.64 | PP_0878 | | dipeptide ABC transporter, binding subunit | 0.51 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.64 | QF045_RS07040 | | peptide ABC transporter ATP-binding protein | 0.49 | QF045_RS07075 | | ABC transporter substrate-binding protein | low | > 93 |
| Pseudomonas sp. BP01 | 0.64 | JOY50_RS10945 | | peptide ABC transporter ATP-binding protein | 0.51 | JOY50_RS10980 | | ABC transporter substrate-binding protein | low | > 84 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_08720 | | Dipeptide ABC transporter, ATP-binding protein DppF | 0.51 | OH686_08695 | | Dipeptide ABC transporter, substrate-binding protein DppA | 0.76 | 10 |
| Pseudomonas aeruginosa MRSN321 | 0.63 | DY961_RS23940 | | peptide ABC transporter ATP-binding protein | 0.53 | DY961_RS23995 | | ABC transporter substrate-binding protein | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.63 | DQ20_RS56405 | | peptide ABC transporter ATP-binding protein | 0.53 | DQ20_RS56455 | | ABC transporter substrate-binding protein | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.63 | IKLFDK_01550 | | Di/tripeptide transport ATP-binding protein DppF | 0.53 | IKLFDK_01600 | | Di/tripeptide-binding protein 1 | low | > 98 |
| Pseudomonas sp. RS175 | 0.62 | PFR28_00124 | | Glutathione import ATP-binding protein GsiA | 0.50 | PFR28_00130 | | Periplasmic dipeptide transport protein | low | > 88 |
| Pectobacterium carotovorum WPP14 | 0.62 | HER17_RS00240 | | ABC transporter ATP-binding protein | 0.60 | HER17_RS00220 | | ABC transporter substrate-binding protein | low | > 75 |
| Pseudomonas sp. DMC3 | 0.62 | GFF5019 | | putative D,D-dipeptide transport ATP-binding protein DdpF | 0.51 | GFF5026 | | Periplasmic dipeptide transport protein | low | > 89 |
| Pseudomonas simiae WCS417 | 0.61 | PS417_04045 | | peptide ABC transporter ATP-binding protein | 0.50 | PS417_04085 | | peptide ABC transporter substrate-binding protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.61 | PFLU_RS04085 | | ABC transporter ATP-binding protein | 0.50 | PFLU_RS04125 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.61 | PFLU_RS04085 | | ABC transporter ATP-binding protein | 0.50 | PFLU_RS04125 | | ABC transporter substrate-binding protein | low | > 109 |
| Serratia liquefaciens MT49 | 0.61 | IAI46_00495 | | ABC transporter ATP-binding protein | 0.60 | IAI46_00475 | | ABC transporter substrate-binding protein | low | > 87 |
| Pseudomonas lactucae CFBP13502 | 0.61 | GEMAOFIL_01013 | | putative D,D-dipeptide transport ATP-binding protein DdpF | 0.50 | GEMAOFIL_01019 | | Periplasmic dipeptide transport protein | low | > 96 |
| Pseudomonas sp. SVBP6 | 0.61 | COO64_RS04085 | | peptide ABC transporter ATP-binding protein | 0.52 | COO64_RS04120 | | ABC transporter substrate-binding protein | low | > 93 |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_14985 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | HEPCGN_14960 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_00166 | | Oligopeptide transport ATP-binding protein OppF | 0.60 | OHPLBJKB_00162 | | Periplasmic dipeptide transport protein | low | > 74 |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_19750 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | JDDGAC_19730 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 87 |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS20255 | | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | ECOLIN_RS20280 | | dipeptide ABC transporter substrate-binding protein DppA | low | > 55 |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_12030 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | KEDOAH_12050 | dppA | dipeptide ABC transporter substrate-binding protein DppA | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_13880 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | NIAGMN_13860 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 80 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_06635 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | MCAODC_06615 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 87 |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_16120 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | OKFHMN_16100 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 79 |
| Escherichia coli BL21 | 0.61 | ECD_03391 | | dipeptide/heme ABC transporter ATPase | 0.60 | ECD_03395 | | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor | low | > 61 |
| Escherichia coli BW25113 | 0.61 | b3540 | dppF | dipeptide transporter (NCBI) | 0.60 | b3544 | dppA | dipeptide transporter (NCBI) | 0.34 | 1 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_08065 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | NOLOHH_08040 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 76 |
| Escherichia coli ECRC62 | 0.61 | BNILDI_03495 | dppF | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | BNILDI_03520 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF479 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | 0.61 | GFF475 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 78 |
| Rahnella sp. WP5 | 0.60 | EX31_RS05495 | | ABC transporter ATP-binding protein | 0.59 | EX31_RS05515 | | ABC transporter substrate-binding protein | low | > 89 |
| Klebsiella pneumoniae MKP103 | 0.60 | KDGMDA_07590 | | dipeptide ABC transporter ATP-binding subunit DppF | 0.60 | KDGMDA_07610 | | Dipeptide-binding protein | low | > 95 |
| Escherichia fergusonii Becca | 0.60 | EFB2_00267 | | Oligopeptide transport ATP-binding protein OppF | 0.60 | EFB2_00263 | | Periplasmic dipeptide transport protein | low | > 86 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_00194 | | Vitamin B12 import ATP-binding protein BtuD | 0.60 | MPMX20_00190 | | Periplasmic dipeptide transport protein | 0.47 | 1 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_3800 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | 0.60 | EX28DRAFT_3804 | | ABC-type dipeptide transport system, periplasmic component | 0.81 | 3 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS28685 | | peptide ABC transporter ATP-binding protein | 0.53 | QEN71_RS28710 | | ABC transporter substrate-binding protein | 0.51 | 76 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS26865 | | dipeptide ABC transporter ATP-binding protein | 0.59 | BWI76_RS26885 | | ABC transporter substrate-binding protein | 0.29 | 3 |
| Erwinia amylovora T8 | 0.59 | OLJFJH_04855 | | dipeptide ABC transporter ATP-binding protein | 0.58 | OLJFJH_04875 | | ABC transporter substrate-binding protein | low | > 58 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS00480 | | ABC transporter ATP-binding protein | 0.60 | DDA3937_RS00460 | | ABC transporter substrate-binding protein | 0.51 | 9 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS20905 | | ABC transporter ATP-binding protein | 0.60 | HGI48_RS20925 | | ABC transporter substrate-binding protein | 0.57 | 4 |
| Erwinia tracheiphila HP pepo 2.2 | 0.59 | IJEDHG_10100 | appF | ABC-type oligopeptide transport system ATPase component | 0.60 | IJEDHG_10080 | | ABC transporter substrate-binding protein | low | > 61 |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS18670 | | peptide ABC transporter ATP-binding protein | 0.52 | BPHYT_RS18690 | | ABC transporter | low | > 109 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS00285 | | ABC transporter ATP-binding protein | 0.60 | LU632_RS00265 | | ABC transporter substrate-binding protein | low | > 73 |
| Pantoea sp. MT58 | 0.59 | IAI47_18630 | | ABC transporter ATP-binding protein | 0.59 | IAI47_18650 | | ABC transporter substrate-binding protein | 0.88 | 1 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.58 | H281DRAFT_05806 | | dipeptide transport system ATP-binding protein | 0.53 | H281DRAFT_05802 | | dipeptide transport system substrate-binding protein | 0.70 | 1 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS21900 | | ABC transporter ATP-binding protein | 0.60 | DZA65_RS21920 | | ABC transporter substrate-binding protein | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_000054 | | dipeptide transport system ATP-binding protein | 0.47 | ABIE53_003951 | | dipeptide transport system substrate-binding protein | low | > 113 |
| Pantoea agglomerans CFBP13505 P0401 | 0.58 | PagCFBP13505_RS15665 | | ABC transporter ATP-binding protein | 0.59 | PagCFBP13505_RS15685 | | ABC transporter substrate-binding protein | low | > 74 |
| Variovorax sp. SCN45 | 0.58 | GFF7287 | | Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2) | 0.68 | GFF7288 | | Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) | low | > 127 |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS04465 | | dipeptide ABC transporter ATP-binding protein | 0.66 | ABID97_RS04470 | | ABC transporter substrate-binding protein | low | > 91 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A2360 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI) | 0.59 | Rru_A2356 | | extracellular solute-binding protein, family 5 (NCBI) | 0.72 | 2 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS03365 | | dipeptide ABC transporter ATP-binding protein | 0.57 | ABIE40_RS03345 | | ABC transporter substrate-binding protein | low | > 107 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_05565 | | ABC transporter ATP-binding protein | 0.32 | CSW01_08445 | | ABC transporter substrate-binding protein | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF183 | | Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) | 0.14 | GFF1368 | | Putative gluthatione transporter,solute-binding component | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.43 | DvMF_2110 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | 0.15 | DvMF_0788 | | extracellular solute-binding protein family 5 (RefSeq) | 0.79 | 1 |
Not shown: 5 genomes with orthologs for MPMX19_04415 only; 10 genomes with orthologs for MPMX19_04419 only