Conservation of cofitness between IAI47_18410 and IAI47_06235 in Pantoea sp. MT58

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_18410 diaminopimelate epimerase 1.0 IAI47_06235 4-phosphoerythronate dehydrogenase PdxB 0.44 17
Erwinia tracheiphila SCR3 0.88 LU632_RS24145 dapF diaminopimelate epimerase 0.74 LU632_RS07815 DUF3410 domain-containing protein — —
Escherichia coli ECRC99 0.86 KEDOAH_13720 dapF diaminopimelate epimerase 0.75 KEDOAH_05535 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli BW25113 0.86 b3809 dapF diaminopimelate epimerase (VIMSS) 0.75 b2320 pdxB erythronate-4-phosphate dehydrogenase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.86 OHPLBJKB_04241 Diaminopimelate epimerase 0.76 OHPLBJKB_01385 Erythronate-4-phosphate dehydrogenase — —
Escherichia coli ECOR27 0.86 NOLOHH_06560 dapF diaminopimelate epimerase 0.76 NOLOHH_14295 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC98 0.86 JDDGAC_18055 dapF diaminopimelate epimerase 0.75 JDDGAC_26620 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli BL21 0.86 ECD_03685 diaminopimelate epimerase 0.76 ECD_02245 erythronate-4-phosphate dehydrogenase low > 60
Escherichia coli ECRC62 0.86 BNILDI_04975 dapF diaminopimelate epimerase 0.76 BNILDI_13215 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia fergusonii Becca 0.86 EFB2_04828 Diaminopimelate epimerase 0.76 EFB2_01538 Erythronate-4-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.86 OKFHMN_14430 dapF diaminopimelate epimerase 0.75 OKFHMN_22660 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC101 0.86 MCAODC_04935 dapF diaminopimelate epimerase 0.75 MCAODC_13700 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC102 0.86 NIAGMN_12185 dapF diaminopimelate epimerase 0.75 NIAGMN_20435 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECOR38 0.86 HEPCGN_13135 dapF diaminopimelate epimerase 0.75 HEPCGN_21865 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Enterobacter sp. TBS_079 0.86 MPMX20_04467 Diaminopimelate epimerase 0.75 MPMX20_03255 Erythronate-4-phosphate dehydrogenase low > 85
Escherichia coli Nissle 1917 0.86 ECOLIN_RS21865 diaminopimelate epimerase 0.76 ECOLIN_RS13445 4-phosphoerythronate dehydrogenase PdxB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF237 Diaminopimelate epimerase (EC 5.1.1.7) 0.77 GFF1936 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Enterobacter asburiae PDN3 0.86 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) 0.75 EX28DRAFT_0284 Phosphoglycerate dehydrogenase and related dehydrogenases low > 76
Serratia liquefaciens MT49 0.84 IAI46_00715 diaminopimelate epimerase 0.72 IAI46_17850 4-phosphoerythronate dehydrogenase PdxB — —
Rahnella sp. WP5 0.84 EX31_RS15155 diaminopimelate epimerase 0.72 EX31_RS19610 4-phosphoerythronate dehydrogenase PdxB 0.64 16
Pectobacterium carotovorum WPP14 0.83 HER17_RS01340 diaminopimelate epimerase 0.70 HER17_RS06980 4-phosphoerythronate dehydrogenase PdxB — —
Dickeya dianthicola ME23 0.83 DZA65_RS21100 diaminopimelate epimerase 0.74 DZA65_RS15380 4-phosphoerythronate dehydrogenase PdxB — —
Dickeya dianthicola 67-19 0.82 HGI48_RS20055 diaminopimelate epimerase 0.70 HGI48_RS14445 4-phosphoerythronate dehydrogenase PdxB — —
Dickeya dadantii 3937 0.82 DDA3937_RS19900 diaminopimelate epimerase 0.74 DDA3937_RS14475 4-phosphoerythronate dehydrogenase PdxB — —
Klebsiella michiganensis M5al 0.82 BWI76_RS01200 diaminopimelate epimerase 0.75 BWI76_RS20390 erythronate-4-phosphate dehydrogenase low > 92
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_00640 diaminopimelate epimerase 0.48 CSW01_10525 DUF3410 domain-containing protein — —
Shewanella sp. ANA-3 0.70 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) 0.44 Shewana3_1476 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq) — —
Shewanella oneidensis MR-1 0.70 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) 0.44 SO3071 pdxB erythronate-4-phosphate dehydrogenase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.70 MIT1002_00159 Diaminopimelate epimerase 0.33 MIT1002_02532 Erythronate-4-phosphate dehydrogenase — —
Shewanella loihica PV-4 0.69 Shew_0323 dapF diaminopimelate epimerase (RefSeq) 0.41 Shew_2309 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) — —
Shewanella amazonensis SB2B 0.64 Sama_3249 dapF diaminopimelate epimerase (RefSeq) 0.43 Sama_2153 erythronate-4-phosphate dehydrogenase (RefSeq) — —
Marinobacter adhaerens HP15 0.58 HP15_248 diaminopimelate epimerase 0.36 HP15_2098 erythronate-4-phosphate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.55 Psest_3765 diaminopimelate epimerase 0.37 Psest_2548 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Pseudomonas sp. S08-1 0.54 OH686_13795 diaminopimelate epimerase 0.37 OH686_02070 Erythronate-4-phosphate dehydrogenase — —
Acinetobacter radioresistens SK82 0.53 MPMX26_02231 Diaminopimelate epimerase 0.31 MPMX26_02238 Erythronate-4-phosphate dehydrogenase — —
Pseudomonas putida KT2440 0.53 PP_5228 diaminopimelate epimerase 0.39 PP_2117 Erythronate-4-phosphate dehydrogenase — —
Pseudomonas sp. RS175 0.53 PFR28_04376 Diaminopimelate epimerase 0.41 PFR28_01103 Erythronate-4-phosphate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_0246 diaminopimelate epimerase (EC 5.1.1.7) 0.38 B158DRAFT_1308 4-phosphoerythronate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_09040 diaminopimelate epimerase 0.43 AO353_00545 erythronate-4-phosphate dehydrogenase — —
Pseudomonas simiae WCS417 0.52 PS417_27585 diaminopimelate epimerase 0.42 PS417_07535 erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_12735 diaminopimelate epimerase 0.40 AO356_02365 erythronate-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) 0.41 Pf6N2E2_2297 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) 0.43 Pf1N1B4_3893 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS29270 diaminopimelate epimerase 0.42 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) 0.43 PfGW456L13_4048 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) — —
Pseudomonas fluorescens SBW25 0.52 PFLU_RS29270 diaminopimelate epimerase 0.42 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_0183 diaminopimelate epimerase 0.44 Psyr_1828 4-phosphoerythronate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_0183 diaminopimelate epimerase 0.44 Psyr_1828 4-phosphoerythronate dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.35 BACOVA_03762 diaminopimelate epimerase 0.33 BACOVA_01953 4-phosphoerythronate dehydrogenase low > 94
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS16035 diaminopimelate epimerase 0.34 HMPREF1181_RS02440 4-phosphoerythronate dehydrogenase PdxB — —
Bacteroides thetaiotaomicron VPI-5482 0.34 BT0548 diaminopimelate epimerase (NCBI ptt file) 0.32 BT3361 erythronate-4-phosphate dehydrogenase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS01230 diaminopimelate epimerase 0.31 HMPREF1078_RS19150 4-phosphoerythronate dehydrogenase PdxB low > 61
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS14295 diaminopimelate epimerase 0.35 ABI39_RS06250 4-phosphoerythronate dehydrogenase PdxB low > 72
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS06915 diaminopimelate epimerase 0.35 HMPREF1058_RS10820 4-phosphoerythronate dehydrogenase PdxB low > 67

Not shown: 49 genomes with orthologs for IAI47_18410 only; 0 genomes with orthologs for IAI47_06235 only