Conservation of cofitness between HSERO_RS20770 and HSERO_RS23825 in Herbaspirillum seropedicae SmR1

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS20770 MFS transporter 1.0 HSERO_RS23825 hypothetical protein 0.31 20
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS06820 cytochrome c oxidase subunit 3 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Ralstonia solanacearum PSI07 0.69 RPSI07_RS22340 cytochrome c oxidase subunit 3 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 81
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS10965 cytochrome c oxidase subunit 3 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Ralstonia solanacearum UW163 0.69 UW163_RS02615 cytochrome c oxidase subunit 3 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Ralstonia solanacearum GMI1000 0.69 RS_RS01805 cytochrome c oxidase subunit 3 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS01895 MFS transporter 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS01520 cytochrome c oxidase subunit 3 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 153
Castellaniella sp019104865 MT123 0.62 ABCV34_RS13255 cytochrome c oxidase subunit 3 0.13 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 48
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_01990 cytochrome c oxidase subunit 3 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 103
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS02665 MFS transporter 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 109
Paraburkholderia graminis OAS925 0.61 ABIE53_000678 cytochrome c oxidase subunit 3 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 113
Acidovorax sp. GW101-3H11 0.61 Ac3H11_3888 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79
Variovorax sp. SCN45 0.61 GFF2302 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 127
Variovorax sp. OAS795 0.60 ABID97_RS23940 cytochrome c oxidase subunit 3 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 91
Pseudomonas fluorescens SBW25 0.52 PFLU_RS00305 cytochrome c oxidase subunit 3 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS00305 cytochrome c oxidase subunit 3 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_1857 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87
Pseudomonas simiae WCS417 0.51 PS417_00315 MFS transporter 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_11175 MFS transporter 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_4101 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 103
Pseudomonas sp. RS175 0.51 PFR28_04688 Cytochrome c oxidase subunit 3 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 88
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_10845 MFS transporter 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_611 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 87
Shewanella loihica PV-4 0.48 Shew_0122 cytochrome c oxidase, subunit III (RefSeq) 0.12 Shew_2411 FAD dependent oxidoreductase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.47 MIT1002_04032 Cytochrome c oxidase subunit 3 0.12 MIT1002_02542 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 70
Pseudomonas stutzeri RCH2 0.47 Psest_4329 Heme/copper-type cytochrome/quinol oxidase, subunit 3 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 67
Pseudomonas sp. S08-1 0.45 OH686_12310 Cytochrome c oxidase polypeptide III 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 80
Pseudomonas putida KT2440 0.45 PP_0106 cytochrome c oxidase subunit 3 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Marinobacter adhaerens HP15 0.45 HP15_3774 cytochrome c oxidase subunit III 0.17 HP15_1540 protein YfcK low > 73
Shewanella oneidensis MR-1 0.42 SO4609 cytochrome c oxidase subunit III (NCBI ptt file) 0.13 SO3073 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_3994 cytochrome c oxidase, subunit III (RefSeq) 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) low > 73
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS00135 cytochrome c oxidase subunit 3 0.11 A4249_RS15340 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD low > 48
Caulobacter crescentus NA1000 0.28 CCNA_03513 cytochrome c oxidase subunit III coxC 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_03513 cytochrome c oxidase subunit III coxC 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC low > 67

Not shown: 20 genomes with orthologs for HSERO_RS20770 only; 30 genomes with orthologs for HSERO_RS23825 only