Conservation of cofitness between HSERO_RS07150 and HSERO_RS22065 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07150 apolipoprotein acyltransferase 1.0 HSERO_RS22065 EpiA 0.44 7
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS26550 carbon-nitrogen hydrolase family protein 0.53 QEN71_RS26355 GDP-L-fucose synthase low > 153
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS03545 apolipoprotein acyltransferase 0.51 BPHYT_RS04005 GDP-L-fucose synthase low > 109
Paraburkholderia graminis OAS925 0.68 ABIE53_000852 putative amidohydrolase 0.52 ABIE53_000941 GDP-L-fucose synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_04689 nitrilase 0.52 H281DRAFT_04777 GDP-L-fucose synthase low > 103
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS05880 acyltransferase 0.49 RR42_RS34460 GDP-L-fucose synthase low > 128
Castellaniella sp019104865 MT123 0.62 ABCV34_RS02585 carbon-nitrogen hydrolase family protein 0.49 ABCV34_RS12930 GDP-L-fucose synthase — —
Dechlorosoma suillum PS 0.59 Dsui_3402 putative amidohydrolase 0.49 Dsui_0086 nucleoside-diphosphate-sugar epimerase low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF2535 FIG003879: Predicted amidohydrolase 0.47 GFF1841 GDP-L-fucose synthetase (EC 1.1.1.271) low > 90
Variovorax sp. SCN45 0.50 GFF5445 FIG003879: Uncharacterized subgroup of the nitrilase superfamily 0.42 GFF60 GDP-L-fucose synthetase (EC 1.1.1.271) low > 127
Variovorax sp. OAS795 0.49 ABID97_RS02000 carbon-nitrogen hydrolase family protein 0.44 ABID97_RS19130 GDP-L-fucose synthase low > 91
Pseudomonas fluorescens SBW25 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.48 PFLU_RS17885 GDP-L-fucose synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.48 PFLU_RS17885 GDP-L-fucose synthase low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_3321 Predicted amidohydrolase 0.47 Psest_1819 Nucleoside-diphosphate-sugar epimerases low > 67
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_2358 nitrilase-like 0.49 Synpcc7942_1700 wcaG GDP-fucose synthetase NAD dependent epimerase/dehydratase — —
Azospirillum brasilense Sp245 0.36 AZOBR_RS02920 amidohydrolase 0.52 AZOBR_RS03370 GDP-L-fucose synthase low > 97
Rhodospirillum rubrum S1H 0.35 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) 0.43 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.35 AMB_RS08115 carbon-nitrogen hydrolase family protein 0.47 AMB_RS04085 GDP-L-fucose synthase low > 64
Phaeobacter inhibens DSM 17395 0.35 PGA1_c34700 putative carbon-nitrogen hydrolase 0.47 PGA1_65p00300 GDP-L-fucose synthetase Fcl — —
Azospirillum sp. SherDot2 0.35 MPMX19_02429 Deaminated glutathione amidase 0.49 MPMX19_05629 GDP-L-fucose synthase low > 112
Agrobacterium fabrum C58 0.33 Atu3510 amidohydrolase 0.43 Atu4790 GDP-fucose synthetase low > 89
Caulobacter crescentus NA1000 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.43 CCNA_00471 GDP-L-fucose synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.43 CCNA_00471 GDP-L-fucose synthase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS13565 carbon-nitrogen hydrolase family protein 0.27 A4249_RS13020 NAD-dependent epimerase/dehydratase family protein low > 48
Dinoroseobacter shibae DFL-12 0.29 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.49 Dshi_4142 NAD-dependent epimerase/dehydratase (RefSeq) low > 64
Dickeya dianthicola 67-19 0.21 HGI48_RS19475 deaminated glutathione amidase 0.22 HGI48_RS18610 GDP-L-fucose synthase low > 71
Enterobacter asburiae PDN3 0.21 EX28DRAFT_2337 Predicted amidohydrolase 0.50 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases low > 76
Escherichia coli ECRC62 0.20 BNILDI_21795 tatE deaminated glutathione amidase 0.50 BNILDI_14590 fcl GDP-L-fucose synthase low > 75
Escherichia coli ECOR27 0.19 NOLOHH_23785 tatE deaminated glutathione amidase 0.51 NOLOHH_15680 fcl GDP-L-fucose synthase low > 75
Escherichia coli ECRC101 0.19 MCAODC_26625 tatE deaminated glutathione amidase 0.50 MCAODC_20590 fcl GDP-L-fucose synthase low > 87
Escherichia coli ECRC98 0.19 JDDGAC_11055 tatE deaminated glutathione amidase 0.50 JDDGAC_28460 fcl GDP-L-fucose synthase low > 86
Escherichia coli ECRC99 0.19 KEDOAH_20560 tatE deaminated glutathione amidase 0.50 KEDOAH_03800 fcl GDP-L-fucose synthase — —
Escherichia coli BL21 0.19 ECD_00595 putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family) 0.50 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase low > 61
Escherichia coli ECRC102 0.19 NIAGMN_05465 tatE deaminated glutathione amidase 0.50 NIAGMN_22295 fcl GDP-L-fucose synthase — —
Escherichia coli ECRC100 0.19 OKFHMN_07410 tatE deaminated glutathione amidase 0.50 OKFHMN_24350 fcl GDP-L-fucose synthase low > 80
Escherichia coli ECOR38 0.19 HEPCGN_00865 tatE deaminated glutathione amidase 0.50 HEPCGN_03050 fcl GDP-L-fucose synthase low > 87
Escherichia coli Nissle 1917 0.19 ECOLIN_RS03410 deaminated glutathione amidase 0.51 ECOLIN_RS12090 GDP-L-fucose synthase — —
Escherichia fergusonii Becca 0.19 EFB2_03466 Deaminated glutathione amidase 0.51 EFB2_01802 GDP-L-fucose synthase low > 86
Enterobacter sp. TBS_079 0.18 MPMX20_01285 Deaminated glutathione amidase 0.50 MPMX20_03034 GDP-L-fucose synthase low > 85
Pectobacterium carotovorum WPP14 0.18 HER17_RS17575 deaminated glutathione amidase 0.46 HER17_RS14535 GDP-L-fucose synthase low > 75
Dickeya dadantii 3937 0.18 DDA3937_RS06130 deaminated glutathione amidase 0.22 DDA3937_RS18680 GDP-L-fucose synthase low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS06520 deaminated glutathione amidase 0.22 DZA65_RS19745 GDP-L-fucose synthase low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS08135 amidohydrolase 0.47 CA265_RS19675 GDP-fucose synthetase low > 88
Mycobacterium tuberculosis H37Rv 0.16 Rv0480c Possible amidohydrolase 0.44 Rv1512 Probable nucleotide-sugar epimerase EpiA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4538 Aliphatic amidase AmiE (EC 3.5.1.4) 0.50 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) low > 78
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS18075 carbon-nitrogen hydrolase 0.48 ABZR88_RS17480 GDP-L-fucose synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1887 Predicted amidohydrolase 0.32 Echvi_4397 Nucleoside-diphosphate-sugar epimerases 0.22 37
Bacteroides thetaiotaomicron VPI-5482 0.14 BT0259 putative amidohydrolase (NCBI ptt file) 0.42 BT1225 GDP-fucose synthetase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.14 BACOVA_00412 hydrolase, carbon-nitrogen family 0.42 BACOVA_00512 NAD dependent epimerase/dehydratase family protein — —
Escherichia coli BW25113 0.12 b0219 yafV predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) 0.50 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) low > 76
Rhodanobacter denitrificans MT42 0.12 LRK55_RS00030 carbon-nitrogen hydrolase 0.46 LRK55_RS03655 GDP-L-fucose synthase — —

Not shown: 42 genomes with orthologs for HSERO_RS07150 only; 7 genomes with orthologs for HSERO_RS22065 only