Conservation of cofitness between HSERO_RS08590 and HSERO_RS18075 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS18075 hypothetical protein 0.32 13
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.22 ABZR87_RS14690 transporter low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.22 RR42_RS03725 magnesium transporter CorA low > 128
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.21 QEN71_RS10115 transporter low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.21 ABIE53_004416 zinc transporter low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.21 H281DRAFT_03824 zinc transporter low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.22 BPHYT_RS33400 magnesium transporter CorA low > 109
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.18 ABID97_RS22590 transporter — —
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.17 GFF5792 Mg2+ and Co2+ transporters low > 127
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12445 rRNA pseudouridine synthase 0.18 AMB_RS07155 zinc transporter ZntB low > 64
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.16 Shewana3_0654 Mg2 transporter protein, CorA family protein (RefSeq) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.14 OHPLBJKB_02340 Zinc transport protein ZntB low > 73
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 NIAGMN_26345 zntB zinc transporter ZntB — —
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 MCAODC_16080 zntB zinc transporter ZntB low > 87
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.14 ECOLIN_RS08050 zinc transporter ZntB — —
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 JDDGAC_04735 zntB zinc transporter ZntB low > 86
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.14 EFB2_02586 Zinc transport protein ZntB low > 86
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 HEPCGN_25985 zntB zinc transporter ZntB low > 87
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 BNILDI_18040 zntB zinc transporter ZntB low > 75
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 NOLOHH_19890 zntB zinc transporter ZntB low > 75
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.14 b1342 ydaN zinc transporter (NCBI) low > 76
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 OKFHMN_02175 zntB zinc transporter ZntB low > 80
Escherichia coli ECRC99 0.26 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.14 KEDOAH_26580 zntB zinc transporter ZntB — —
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.14 ECD_01319 putative Zn(II) transporter low > 61
Rahnella sp. WP5 0.26 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.16 EX31_RS09325 transporter low > 89
Dickeya dadantii 3937 0.26 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.15 DDA3937_RS12335 zinc transporter ZntB low > 74
Pantoea sp. MT58 0.26 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.16 IAI47_09465 zinc transporter ZntB low > 76
Dickeya dianthicola ME23 0.26 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.14 DZA65_RS12860 zinc transporter ZntB low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.15 HGI48_RS12415 zinc transporter ZntB low > 71
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.17 IAI46_13130 transporter low > 86
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.13 Sama_0644 magnesium transporter, putative (RefSeq) low > 62
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.14 MPMX20_02443 Zinc transport protein ZntB low > 85
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.14 EX28DRAFT_1004 Mg2+ and Co2+ transporters low > 76
Lysobacter sp. OAE881 0.24 ABIE51_RS18480 pseudouridine synthase 0.08 ABIE51_RS09595 CorA family divalent cation transporter low > 62
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.11 CSW01_11825 zinc transporter ZntB low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.14 GFF2650 Zinc transport protein ZntB low > 78
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.19 ABIE40_RS03850 transporter low > 107
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.21 Pf1N1B4_3402 Magnesium and cobalt transport protein CorA — —
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.21 AO353_03165 magnesium transporter CorA — —
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.22 AO356_18550 magnesium transporter CorA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.22 Psyr_1774 Mg2+ transporter protein, CorA-like protein — —
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.22 Psyr_1774 Mg2+ transporter protein, CorA-like protein low > 86
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.19 Psest_2314 Mg2+ and Co2+ transporters low > 67
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.16 PP_2085 CmaX protein — —
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.20 Pf6N2E2_5638 Magnesium and cobalt transport protein CorA 0.30 13
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.21 PFR28_03305 Zinc transport protein ZntB low > 88
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.18 OH686_01645 Magnesium and cobalt transport protein CorA low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.21 PfGW456L13_1941 Magnesium and cobalt transport protein CorA low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.21 PS417_21890 magnesium transporter CorA low > 88
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.22 PFLU_RS23490 transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.22 PFLU_RS23490 transporter low > 109

Not shown: 21 genomes with orthologs for HSERO_RS08590 only; 9 genomes with orthologs for HSERO_RS18075 only