Conservation of cofitness between HSERO_RS03410 and HSERO_RS11035 in Herbaspirillum seropedicae SmR1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03410 polyisoprenoid-binding protein 1.0 HSERO_RS11035 7-cyano-7-deazaguanine reductase 0.30 2
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS01300 YceI family protein 0.68 ABZR87_RS12145 7-carboxy-7-deazaguanine synthase low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS11595 polyisoprenoid-binding protein 0.67 RPSI07_RS16890 7-carboxy-7-deazaguanine synthase — —
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS03435 polyisoprenoid-binding protein 0.66 BPHYT_RS01505 7-cyano-7-deazaguanine reductase low > 109
Paraburkholderia graminis OAS925 0.64 ABIE53_000826 polyisoprenoid-binding protein YceI 0.66 ABIE53_000397 7-carboxy-7-deazaguanine synthase low > 113
Ralstonia solanacearum UW163 0.64 UW163_RS07920 polyisoprenoid-binding protein 0.68 UW163_RS13945 7-carboxy-7-deazaguanine synthase — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS05705 polyisoprenoid-binding protein 0.68 RALBFv3_RS00615 7-carboxy-7-deazaguanine synthase — —
Ralstonia solanacearum GMI1000 0.64 RS_RS13595 polyisoprenoid-binding protein 0.69 RS_RS07295 7-carboxy-7-deazaguanine synthase low > 80
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS26665 YceI family protein 0.67 QEN71_RS00205 7-carboxy-7-deazaguanine synthase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04665 Polyisoprenoid-binding protein YceI 0.66 H281DRAFT_02231 7-carboxy-7-deazaguanine synthase, Cx14CxxC type low > 103
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS17440 polyisoprenoid-binding protein 0.68 RR42_RS11390 7-cyano-7-deazaguanine reductase — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_3546 Protein yceI precursor 0.60 Ac3H11_3825 Queuosine Biosynthesis QueE Radical SAM — —
Variovorax sp. OAS795 0.42 ABID97_RS04790 YceI family protein 0.60 ABID97_RS07425 7-carboxy-7-deazaguanine synthase — —
Variovorax sp. SCN45 0.40 GFF6286 Probable signal peptide protein 0.59 GFF2577 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF95 Probable signal peptide protein 0.63 GFF4633 Queuosine Biosynthesis QueE Radical SAM low > 90
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF2611 FIG01200701: possible membrane protein 0.17 GFF4831 Queuosine Biosynthesis QueE Radical SAM — —
Azospirillum brasilense Sp245 0.28 AZOBR_RS24000 polyprenyl-pyrophosphate binding protein 0.20 AZOBR_RS04155 radical SAM protein low > 97
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS06800 YceI family protein 0.21 ABZR88_RS09380 7-carboxy-7-deazaguanine synthase QueE low > 71
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_0439 Uncharacterized conserved protein 0.14 B158DRAFT_1144 Organic radical activating enzymes low > 40
Escherichia coli ECRC98 0.22 JDDGAC_07420 yceI YceI family protein 0.18 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE low > 86
Escherichia coli BL21 0.22 ECD_01052 periplasmic high pH-inducible lipid-binding protein 0.18 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis — —
Escherichia coli ECRC102 0.22 NIAGMN_24070 yceI YceI family protein 0.18 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC99 0.22 KEDOAH_23995 yceI YceI family protein 0.18 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC100 0.22 OKFHMN_03760 yceI YceI family protein 0.18 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC62 0.22 BNILDI_19450 yceI YceI family protein 0.18 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE low > 75
Escherichia coli BW25113 0.22 b1056 yceI hypothetical protein (NCBI) 0.18 b2777 ygcF hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.22 MCAODC_23120 yceI YceI family protein 0.18 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE low > 87
Escherichia coli ECOR27 0.22 NOLOHH_21290 yceI YceI family protein 0.18 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE low > 75
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS15520 YceI family protein 0.58 A4249_RS08695 7-carboxy-7-deazaguanine synthase — —
Escherichia fergusonii Becca 0.21 EFB2_02918 Protein YceI 0.18 EFB2_01141 7-carboxy-7-deazaguanine synthase low > 86
Erwinia tracheiphila SCR3 0.21 LU632_RS10305 YceI family protein 0.18 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS21410 hypothetical protein 0.21 CA265_RS08930 7-carboxy-7-deazaguanine synthase QueE 0.38 10
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_16930 YceI family protein 0.19 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_02609 Protein YceI 0.18 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase low > 73
Escherichia coli Nissle 1917 0.21 ECOLIN_RS06130 YceI family protein 0.18 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECOR38 0.21 HEPCGN_23730 yceI YceI family protein 0.18 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE low > 87
Enterobacter asburiae PDN3 0.21 EX28DRAFT_1875 Uncharacterized conserved protein 0.18 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE low > 76
Alteromonas macleodii MIT1002 0.21 MIT1002_03884 hypothetical protein 0.19 MIT1002_01264 7-carboxy-7-deazaguanine synthase low > 70
Caulobacter crescentus NA1000 0.20 CCNA_02203 YceI-like domain protein 0.60 CCNA_03261 queuosine biosynthesis protein QueE low > 66
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_02203 YceI-like domain protein 0.60 CCNA_03261 queuosine biosynthesis protein QueE low > 67
Shewanella amazonensis SB2B 0.20 Sama_0950 hypothetical protein (RefSeq) 0.20 Sama_1825 radical activating enzyme (RefSeq) low > 62
Enterobacter sp. TBS_079 0.20 MPMX20_01736 Protein YceI 0.18 MPMX20_03645 7-carboxy-7-deazaguanine synthase low > 85
Marinobacter adhaerens HP15 0.20 HP15_2523 hypothetical protein 0.55 HP15_3815 organic radical activating enzyme low > 73
Dickeya dadantii 3937 0.20 DDA3937_RS13190 YceI family protein 0.19 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE low > 74
Serratia liquefaciens MT49 0.20 IAI46_09690 YceI family protein 0.17 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE low > 86
Shewanella loihica PV-4 0.19 Shew_1121 hypothetical protein (RefSeq) 0.21 Shew_2061 radical SAM domain-containing protein (RefSeq) low > 60
Dickeya dianthicola 67-19 0.19 HGI48_RS13255 YceI family protein 0.18 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE low > 71
Dickeya dianthicola ME23 0.19 DZA65_RS13730 YceI family protein 0.18 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE low > 75
Shewanella sp. ANA-3 0.18 Shewana3_1179 hypothetical protein (RefSeq) 0.21 Shewana3_2163 radical activating enzyme (RefSeq) — —
Rahnella sp. WP5 0.18 EX31_RS24340 YceI family protein 0.18 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE low > 89
Pectobacterium carotovorum WPP14 0.18 HER17_RS08575 YceI family protein 0.19 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE low > 75
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_03670 polyisoprenoid-binding protein 0.23 CA264_07135 7-carboxy-7-deazaguanine synthase QueE low > 74
Shewanella oneidensis MR-1 0.16 SO3370 conserved hypothetical protein (NCBI ptt file) 0.20 SO2501 radical activating enzyme (NCBI ptt file) low > 76

Not shown: 19 genomes with orthologs for HSERO_RS03410 only; 15 genomes with orthologs for HSERO_RS11035 only