Conservation of cofitness between HSERO_RS08590 and HSERO_RS08405 in Herbaspirillum seropedicae SmR1

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS08405 membrane protein 0.31 16
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.42 ABZR87_RS15885 hemolysin family protein low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS00960 16S rRNA pseudouridine(516) synthase 0.40 UW163_RS09720 HlyC/CorC family transporter — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase 0.40 RALBFv3_RS03950 HlyC/CorC family transporter low > 76
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.42 RR42_RS04375 magnesium transporter low > 128
Ralstonia solanacearum PSI07 0.48 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase 0.41 RPSI07_RS13270 HlyC/CorC family transporter low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS03390 16S rRNA pseudouridine(516) synthase 0.41 RS_RS11430 HlyC/CorC family transporter low > 80
Dechlorosoma suillum PS 0.47 Dsui_0824 pseudouridine synthase family protein 0.28 Dsui_3105 CBS domain-containing protein low > 51
Acinetobacter radioresistens SK82 0.44 MPMX26_01203 Ribosomal small subunit pseudouridine synthase A 0.51 MPMX26_02321 hypothetical protein low > 36
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.49 ABID97_RS07170 hemolysin family protein low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.47 GFF2520 UPF0053 inner membrane protein YtfL low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.25 GFF4625 Magnesium and cobalt efflux protein CorC low > 90
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12445 rRNA pseudouridine synthase 0.23 AMB_RS10875 HlyC/CorC family transporter low > 64
Erwinia tracheiphila SCR3 0.28 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.51 LU632_RS02100 hemolysin family protein low > 74
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 66
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS15935 rRNA pseudouridine synthase 0.21 LRK54_RS12975 hemolysin family protein low > 59
Rhodanobacter denitrificans MT42 0.27 LRK55_RS15690 pseudouridine synthase 0.21 LRK55_RS12675 hemolysin family protein low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_09050 Pseudouridine synthase 0.22 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.54 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.53 EFB2_04311 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.53 OHPLBJKB_03816 hypothetical protein low > 73
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 NIAGMN_09865 paeA Polyamine export protein — —
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 NOLOHH_04280 paeA Polyamine export protein low > 75
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 MCAODC_02530 paeA Polyamine export protein low > 87
Escherichia coli ECRC99 0.26 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 JDDGAC_15655 paeA Polyamine export protein low > 86
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 HEPCGN_10215 paeA Polyamine export protein low > 87
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 BNILDI_07240 tlyC Polyamine export protein low > 75
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.53 ECOLIN_RS24495 hemolysin family protein — —
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.53 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.53 OKFHMN_12015 paeA Polyamine export protein low > 80
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.53 ECD_04089 UPF0053 family inner membrane protein low > 61
Dickeya dadantii 3937 0.26 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.52 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Pectobacterium carotovorum WPP14 0.26 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.51 HER17_RS03970 hemolysin family protein low > 75
Pantoea sp. MT58 0.26 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.51 IAI47_02710 HlyC/CorC family transporter low > 76
Rahnella sp. WP5 0.26 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.52 EX31_RS08705 HlyC/CorC family transporter low > 89
Dickeya dianthicola ME23 0.26 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.52 DZA65_RS18310 HlyC/CorC family transporter low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.52 HGI48_RS17225 HlyC/CorC family transporter low > 71
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.51 Sama_3284 hemolysin, putative (RefSeq) 0.41 6
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.54 IAI46_01760 HlyC/CorC family transporter low > 86
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.53 MPMX20_00495 hypothetical protein low > 85
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4611.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.19 Xcc-8004.3156.1 Magnesium and cobalt efflux protein CorC low > 74
Klebsiella michiganensis M5al 0.24 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.52 BWI76_RS02765 membrane protein — —
Lysobacter sp. OAE881 0.24 ABIE51_RS18480 pseudouridine synthase 0.20 ABIE51_RS06575 hemolysin family protein low > 62
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.52 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains low > 76
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.51 CSW01_18340 HlyC/CorC family transporter low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.52 GFF871 Putative membrane protein low > 78
Shewanella loihica PV-4 0.23 Shew_2975 pseudouridine synthase (RefSeq) 0.52 Shew_0284 hypothetical protein (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase 0.23 ABZR86_RS19900 hemolysin family protein low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS11350 pseudouridine synthase 0.23 A4249_RS08175 hemolysin family protein low > 48
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.21 ABIE40_RS21835 hemolysin family protein low > 107

Not shown: 20 genomes with orthologs for HSERO_RS08590 only; 19 genomes with orthologs for HSERO_RS08405 only