Conservation of cofitness between HSERO_RS03615 and HSERO_RS08285 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 HSERO_RS08285 amino acid ABC transporter ATP-binding protein 0.27 16
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.77 RR42_RS14410 leucine/isoleucine/valine transporter ATP-binding subunit low > 128
Variovorax sp. OAS795 0.71 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 ABID97_RS27570 ABC transporter ATP-binding protein low > 91
Castellaniella sp019104865 MT123 0.70 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 ABCV34_RS03630 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG 0.89 4
Marinobacter adhaerens HP15 0.64 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.70 HP15_3058 leucine/isoleucine/valine transporter ATP-binding subunit low > 73
Pantoea sp. MT58 0.63 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 IAI47_01580 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 76
Escherichia coli ECRC62 0.62 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 BNILDI_02955 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 75
Pseudomonas sp. S08-1 0.62 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.67 OH686_04620 Branched-chain amino acid ABC transporter, ATP-binding protein LivG low > 80
Escherichia coli ECOR27 0.62 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 NOLOHH_08550 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 75
Escherichia coli ECRC98 0.62 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 JDDGAC_20385 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 OHPLBJKB_00248 Lipopolysaccharide export system ATP-binding protein LptB low > 73
Escherichia fergusonii Becca 0.62 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 EFB2_00367 Lipopolysaccharide export system ATP-binding protein LptB low > 86
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.68 PfGW456L13_4610 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) low > 87
Escherichia coli BL21 0.62 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.62 ECD_03304 branched-chain amino acid ABC transporter ATPase low > 61
Escherichia coli ECRC100 0.62 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 OKFHMN_16755 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 80
Escherichia coli ECRC102 0.62 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 NIAGMN_14525 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.63 GFF551 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) low > 78
Escherichia coli ECRC99 0.62 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 KEDOAH_11385 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Escherichia coli ECRC101 0.62 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 MCAODC_07285 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 87
Escherichia coli BW25113 0.62 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.62 b3455 livG leucine/isoleucine/valine transporter subunit (NCBI) low > 76
Escherichia coli ECOR38 0.62 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 HEPCGN_15575 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 87
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.65 Psyr_3848 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.65 Psyr_3848 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein low > 86
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.69 Pf6N2E2_2925 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) low > 103
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.69 AO356_05335 ABC transporter ATP-binding protein low > 104
Escherichia coli Nissle 1917 0.62 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 ECOLIN_RS19760 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.66 AO353_17110 ABC transporter ATP-binding protein low > 101
Serratia liquefaciens MT49 0.62 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 IAI46_00975 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 86
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.67 Pf1N1B4_3215 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) — —
Pseudomonas sp. RS175 0.62 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.67 PFR28_00537 Lipopolysaccharide export system ATP-binding protein LptB low > 88
Erwinia tracheiphila SCR3 0.61 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.64 LU632_RS19240 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 74
Pseudomonas simiae WCS417 0.61 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.68 PS417_06600 leucine/isoleucine/valine transporter ATP-binding subunit low > 88
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.67 PFLU_RS06630 ABC transporter ATP-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.67 PFLU_RS06630 ABC transporter ATP-binding protein low > 109
Klebsiella michiganensis M5al 0.61 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 BWI76_RS26335 ABC transporter ATP-binding protein — —
Pseudomonas stutzeri RCH2 0.61 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.67 Psest_1309 ABC-type branched-chain amino acid transport systems, ATPase component low > 67
Pectobacterium carotovorum WPP14 0.61 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 HER17_RS00510 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 MPMX20_04331 Lipopolysaccharide export system ATP-binding protein LptB low > 85
Dickeya dianthicola 67-19 0.60 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 HGI48_RS20715 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 71
Dickeya dadantii 3937 0.60 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 DDA3937_RS00675 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 74
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.63 EX28DRAFT_4287 ABC-type branched-chain amino acid transport systems, ATPase component low > 76
Rahnella sp. WP5 0.60 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.61 EX31_RS14790 ABC transporter ATP-binding protein low > 89
Azospirillum sp. SherDot2 0.43 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.52 MPMX19_05498 Lipopolysaccharide export system ATP-binding protein LptB low > 112
Azospirillum brasilense Sp245 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.52 AZOBR_RS08245 L-proline and D-alanine ABC transporter, ATPase component 1 (from data) low > 97
Agrobacterium fabrum C58 0.43 Atu0356 miaB protein 0.49 Atu2425 ABC transporter, nucleotide binding/ATPase protein low > 89
Rhizobium sp. OAE497 0.43 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 ABIE40_RS14705 ABC transporter ATP-binding protein 0.40 74
Sinorhizobium meliloti 1021 0.43 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.50 SMc01949 high-affinity branched-chain amino acid ABC transporter ATP-binding protein low > 103
Magnetospirillum magneticum AMB-1 0.43 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 AMB_RS09125 ABC transporter ATP-binding protein low > 64
Rhodospirillum rubrum S1H 0.40 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.55 Rru_A1749 ABC transporter component (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.38 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 TX73_019720 ABC transporter ATP-binding protein low > 86
Bifidobacterium breve UCC2003 0.33 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 BBR_RS18060 ABC transporter ATP-binding protein low > 34

Not shown: 51 genomes with orthologs for HSERO_RS03615 only; 1 genomes with orthologs for HSERO_RS08285 only