Conservation of cofitness between HSERO_RS22035 and HSERO_RS02410 in Herbaspirillum seropedicae SmR1

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 1.0 HSERO_RS02410 acriflavine resistance protein B 0.30 9
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.63 Pf6N2E2_1661 RND efflux system, inner membrane transporter CmeB low > 103
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 0.64 Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.63 AO353_26845 acriflavine resistance protein B low > 101
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.63 PfGW456L13_2954 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_3705 conserved hypothetical protein 0.57 Psyr_2282 Hydrophobe/amphiphile efflux-1 HAE1 low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_3705 conserved hypothetical protein 0.57 Psyr_2282 Hydrophobe/amphiphile efflux-1 HAE1 low > 86
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.63 AO356_28730 acriflavine resistance protein B low > 104
Pseudomonas sp. RS175 0.60 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.63 PFR28_02463 Multidrug resistance protein MexB low > 88
Pseudomonas simiae WCS417 0.60 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.62 PS417_12585 acriflavine resistance protein B low > 88
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.66 RR42_RS20650 multidrug efflux RND transporter permease subunit low > 128
Ralstonia solanacearum PSI07 0.59 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.76 RPSI07_RS23905 hydrophobe/amphiphile efflux-1 family RND transporter low > 81
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.75 ABZR87_RS05315 efflux RND transporter permease subunit low > 80
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.62 PFLU_RS13280 multidrug efflux RND transporter permease subunit low > 109
Pseudomonas putida KT2440 0.59 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.62 PP_3456 Multidrug resistance protein MexB low > 96
Pseudomonas fluorescens SBW25 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.62 PFLU_RS13280 multidrug efflux RND transporter permease subunit low > 109
Ralstonia solanacearum UW163 0.59 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.76 UW163_RS04135 multidrug efflux RND transporter permease subunit — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.76 RALBFv3_RS09445 multidrug efflux RND transporter permease subunit low > 76
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_2154 tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) 0.52 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family low > 40
Ralstonia solanacearum GMI1000 0.59 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.76 RS_RS00045 multidrug efflux RND transporter permease subunit low > 80
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase 0.68 Ac3H11_4448 RND efflux system, inner membrane transporter CmeB low > 79
Marinobacter adhaerens HP15 0.58 HP15_2116 PP-loop domain protein 0.40 HP15_933 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.68 GFF3840 RND efflux system, inner membrane transporter CmeB low > 90
Variovorax sp. OAS795 0.56 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA 0.67 ABID97_RS00325 efflux RND transporter permease subunit low > 91
Castellaniella sp019104865 MT123 0.56 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.58 ABCV34_RS04225 efflux RND transporter permease subunit 0.21 31
Variovorax sp. SCN45 0.56 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.67 GFF3725 RND efflux system, inner membrane transporter low > 127
Lysobacter sp. OAE881 0.54 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.50 ABIE51_RS17980 multidrug efflux RND transporter permease subunit low > 62
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10320 tRNA 2-thiocytidine(32) synthetase TtcA 0.48 LRK55_RS01875 multidrug efflux RND transporter permease subunit low > 63
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_13200 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.49 OKGIIK_09170 Efflux pump membrane transporter low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS10680 tRNA 2-thiocytidine(32) synthetase TtcA 0.48 LRK54_RS02100 multidrug efflux RND transporter permease subunit low > 59
Sinorhizobium meliloti 1021 0.45 SMc00534 C32 tRNA thiolase 0.65 SMc02867 multidrug-efflux system transmembrane protein 0.25 24
Agrobacterium fabrum C58 0.43 Atu1858 hypothetical protein 0.61 Atu3202 RND multidrug efflux transporter low > 89
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13920 tRNA 2-thiocytidine biosynthesis TtcA family protein 0.36 HMPREF1078_RS08425 efflux RND transporter permease subunit low > 61
Bacteroides ovatus ATCC 8483 0.20 BACOVA_05345 PP-loop family protein 0.37 BACOVA_02607 RND transporter, HAE1 family low > 94
Bacteroides thetaiotaomicron VPI-5482 0.20 BT4558 conserved hypothetical protein (NCBI ptt file) 0.36 BT0886 putative cation efflux pump (NCBI ptt file) low > 81
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2293 PP-loop domain protein (RefSeq) 0.43 DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) low > 51

Not shown: 43 genomes with orthologs for HSERO_RS22035 only; 10 genomes with orthologs for HSERO_RS02410 only