| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 1.0 | HSERO_RS02085 | | membrane protein | 0.30 | 3 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.56 | Ac3H11_540 | | Membrane protein, putative | low | > 79 |
| Variovorax sp. SCN45 | 0.37 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.56 | GFF7044 | | Inner membrane protein YedI | low | > 127 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.58 | ABID97_RS21015 | | DUF808 domain-containing protein | — | — |
| Pseudomonas putida KT2440 | 0.35 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | 0.58 | PP_4294 | | conserved inner membrane protein | low | > 96 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.61 | OH686_13580 | | Inner membrane protein YedI | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.61 | PFLU_RS08885 | | DUF808 domain-containing protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.61 | PFLU_RS08885 | | DUF808 domain-containing protein | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | 0.60 | AO353_01900 | | hypothetical protein | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.63 | Psest_1878 | | Uncharacterized protein conserved in bacteria | low | > 67 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | 0.61 | PS417_08830 | | membrane protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | 0.58 | AO356_19640 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.60 | PFR28_03107 | | Inner membrane protein YedI | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.54 | Psyr_1803 | | Protein of unknown function DUF808 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.54 | Psyr_1803 | | Protein of unknown function DUF808 | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.59 | Pf6N2E2_5844 | | Membrane protein, putative | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.59 | PfGW456L13_4283 | | Membrane protein, putative | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.59 | Pf1N1B4_3666 | | Membrane protein, putative | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.57 | GFF4569 | | Membrane protein, putative | low | > 90 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_829 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.55 | HP15_3200 | | membrane protein containing DUF808 | low | > 73 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.54 | EX28DRAFT_0596 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.54 | MPMX20_02954 | | Inner membrane protein YedI | 0.25 | 18 |
| Rahnella sp. WP5 | 0.14 | EX31_RS08600 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.54 | EX31_RS21945 | | DUF808 domain-containing protein | low | > 89 |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.53 | BWI76_RS18405 | | hypothetical protein | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.13 | GFF2924 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.53 | GFF3999 | | Putative inner membrane protein | low | > 78 |
| Escherichia coli ECOR27 | 0.13 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | NOLOHH_16245 | yedI | Inner membrane protein YedI | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.13 | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.52 | OHPLBJKB_01770 | | Inner membrane protein YedI | low | > 73 |
| Escherichia coli BW25113 | 0.13 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | 0.52 | b1958 | yedI | conserved inner membrane protein (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.13 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.53 | ECOLIN_RS11135 | | DUF808 domain-containing protein | low | > 55 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | HEPCGN_03975 | yedI | Inner membrane protein YedI | low | > 87 |
| Escherichia fergusonii Becca | 0.13 | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.53 | EFB2_01989 | | Inner membrane protein YedI | low | > 86 |
| Escherichia coli ECRC62 | 0.13 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | BNILDI_15035 | yedI | Inner membrane protein YedI | low | > 75 |
| Escherichia coli ECRC101 | 0.13 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | MCAODC_19780 | yedI | Inner membrane protein YedI | low | > 87 |
| Escherichia coli ECRC98 | 0.13 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | JDDGAC_00200 | yedI | Inner membrane protein YedI | low | > 86 |
| Escherichia coli ECRC99 | 0.13 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | KEDOAH_02480 | yedI | Inner membrane protein YedI | — | — |
| Escherichia coli ECRC100 | 0.13 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | OKFHMN_25615 | yedI | Inner membrane protein YedI | low | > 80 |
| Escherichia coli ECRC102 | 0.13 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.52 | NIAGMN_02440 | yedI | Inner membrane protein YedI | — | — |
| Serratia liquefaciens MT49 | 0.13 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.59 | IAI46_06850 | | DUF808 domain-containing protein | low | > 86 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_1985 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | 0.60 | Shewana3_0979 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.11 | SO2394 | dacB | penicillin-binding protein 4 (NCBI ptt file) | 0.60 | SO1151 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.11 | CA265_RS15410 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.36 | CA265_RS00085 | | hypothetical protein | low | > 88 |
| Azospirillum brasilense Sp245 | 0.10 | AZOBR_RS18340 | | D-alanyl-D-alanine carboxypeptidase | 0.25 | AZOBR_RS23860 | | ABC transporter | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.09 | Dshi_2208 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | 0.29 | Dshi_1739 | | protein of unknown function DUF808 (RefSeq) | low | > 64 |
| Vibrio cholerae E7946 ATCC 55056 | 0.08 | CSW01_03320 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.51 | CSW01_18785 | | DUF808 domain-containing protein | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.08 | Ga0059261_1299 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.28 | Ga0059261_0099 | | Uncharacterized protein conserved in bacteria | low | > 68 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.06 | Echvi_2231 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) | 0.38 | Echvi_3821 | | Uncharacterized protein conserved in bacteria | low | > 79 |
Not shown: 24 genomes with orthologs for HSERO_RS16870 only; 10 genomes with orthologs for HSERO_RS02085 only