Conservation of cofitness between HER17_RS00965 and HER17_RS17435 in Pectobacterium carotovorum WPP14

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00965 HTH-type transcriptional repressor FabR 1.0 HER17_RS17435 type II toxin-antitoxin system RatA family toxin 0.86 16
Dickeya dianthicola ME23 0.93 DZA65_RS21440 HTH-type transcriptional repressor FabR 0.80 DZA65_RS04220 type II toxin-antitoxin system RatA family toxin low > 75
Dickeya dianthicola 67-19 0.93 HGI48_RS20395 HTH-type transcriptional repressor FabR 0.80 HGI48_RS04305 type II toxin-antitoxin system RatA family toxin low > 71
Dickeya dadantii 3937 0.93 DDA3937_RS00980 HTH-type transcriptional repressor FabR 0.82 DDA3937_RS04310 type II toxin-antitoxin system RatA family toxin low > 74
Escherichia coli ECOR38 0.92 HEPCGN_12200 fabR HTH-type transcriptional repressor FabR 0.78 HEPCGN_20250 ratA type II toxin-antitoxin system toxin RatA low > 87
Escherichia coli BL21 0.92 ECD_03848 transcriptional repressor of fabA and fabB 0.78 ECD_02507 toxic UPF0083 family protein inhibitor of 70S ribosome formation low > 61
Escherichia fergusonii Becca 0.92 EFB2_04647 HTH-type transcriptional repressor FabR 0.79 EFB2_01274 Persistence and stress-resistance toxin PasT low > 86
Escherichia coli ECRC101 0.92 MCAODC_04045 fabR HTH-type transcriptional repressor FabR 0.78 MCAODC_11655 ratA type II toxin-antitoxin system toxin RatA
Enterobacter sp. TBS_079 0.92 MPMX20_04517 HTH-type transcriptional repressor FabR 0.77 MPMX20_03489 Persistence and stress-resistance toxin PasT
Escherichia coli ECRC62 0.92 BNILDI_05835 fabR HTH-type transcriptional repressor FabR 0.78 BNILDI_11605 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli ECRC99 0.92 KEDOAH_14615 fabR HTH-type transcriptional repressor FabR 0.78 KEDOAH_07090 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli ECRC100 0.92 OKFHMN_13545 fabR HTH-type transcriptional repressor FabR 0.78 OKFHMN_21130 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli Nissle 1917 0.92 ECOLIN_RS22890 HTH-type transcriptional repressor FabR 0.78 ECOLIN_RS14790 type II toxin-antitoxin system toxin RatA low > 55
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4426 transcriptional regulator, TetR family 0.77 EX28DRAFT_2722 Oligoketide cyclase/lipid transport protein
Escherichia coli ECRC102 0.92 NIAGMN_11295 fabR HTH-type transcriptional repressor FabR 0.78 NIAGMN_18900 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli ECRC98 0.92 JDDGAC_17170 fabR HTH-type transcriptional repressor FabR 0.78 JDDGAC_24795 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli BW25113 0.92 b3963 fabR DNA-binding transcriptional repressor (RefSeq) 0.78 b2619 yfjG hypothetical protein (NCBI)
Escherichia coli ECOR27 0.92 NOLOHH_05690 fabR HTH-type transcriptional repressor FabR 0.78 NOLOHH_12800 ratA type II toxin-antitoxin system toxin RatA
Escherichia coli HS(pFamp)R (ATCC 700891) 0.92 OHPLBJKB_04087 HTH-type transcriptional repressor FabR 0.78 OHPLBJKB_01088 Ribosome association toxin RatA
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2349 Unsaturated fatty acid biosythesis repressor FabR, TetR family 0.66 GFF4159 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W
Klebsiella michiganensis M5al 0.91 BWI76_RS00875 DNA-binding transcriptional regulator FabR 0.75 BWI76_RS21575 hypothetical protein
Serratia liquefaciens MT49 0.91 IAI46_24465 HTH-type transcriptional repressor FabR 0.83 IAI46_19650 type II toxin-antitoxin system RatA family toxin
Rahnella sp. WP5 0.90 EX31_RS14160 HTH-type transcriptional repressor FabR 0.76 EX31_RS21745 type II toxin-antitoxin system RatA family toxin
Pantoea sp. MT58 0.90 IAI47_00940 HTH-type transcriptional repressor FabR 0.75 IAI47_04795 type II toxin-antitoxin system RatA family toxin
Erwinia tracheiphila SCR3 0.90 LU632_RS19580 fabR HTH-type transcriptional repressor FabR 0.74 LU632_RS17020 type II toxin-antitoxin system RatA family toxin low > 74
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_00775 HTH-type transcriptional repressor FabR 0.64 CSW01_04380 ubiquinone-binding protein
Shewanella amazonensis SB2B 0.65 Sama_0192 DNA-binding transcriptional repressor FabR (RefSeq) 0.60 Sama_2387 hypothetical protein (RefSeq)
Shewanella loihica PV-4 0.65 Shew_0137 DNA-binding transcriptional repressor FabR (RefSeq) 0.59 Shew_1269 cyclase/dehydrase (RefSeq)
Shewanella sp. ANA-3 0.65 Shewana3_0178 DNA-binding transcriptional repressor FabR (RefSeq) 0.58 Shewana3_2951 cyclase/dehydrase (RefSeq)
Shewanella oneidensis MR-1 0.65 SO0198 transcriptional regulator, TetR family (NCBI ptt file) 0.57 SO1474 conserved hypothetical protein (NCBI ptt file)
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_1831 transcriptional regulator, TetR family 0.49 B158DRAFT_0970 Oligoketide cyclase/lipid transport protein
Marinobacter adhaerens HP15 0.56 HP15_2045 DNA-binding transcriptional repressor FabR 0.46 HP15_3088 oligoketide cyclase/lipid transport protein low > 73
Alteromonas macleodii MIT1002 0.55 MIT1002_03371 HTH-type transcriptional repressor FabR 0.58 MIT1002_01807 Toxin RatA
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4923.1 Unsaturated fatty acid biosythesis repressor FabR, TetR family 0.34 Xcc-8004.3436.1 hypothetical protein
Pseudomonas sp. S08-1 0.31 OH686_16690 Transcriptional regulator, AcrR family 0.45 OH686_17030 Ribosome association toxin RatA
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4450 transcriptional regulator, TetR family 0.45 Psyr_4201 cyclase/dehydrase
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4450 transcriptional regulator, TetR family 0.45 Psyr_4201 cyclase/dehydrase
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_110 Unsaturated fatty acid biosythesis repressor FabR, TetR family 0.46 PfGW456L13_5110 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W
Lysobacter sp. OAE881 0.28 ABIE51_RS00935 HTH-type transcriptional repressor FabR 0.35 ABIE51_RS11675 type II toxin-antitoxin system RatA family toxin low > 62
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1370 Unsaturated fatty acid biosythesis repressor FabR, TetR family 0.45 Pf1N1B4_1182 Putative oligoketide cyclase/dehydratase or lipid transport protein YfjG
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_13415 TetR family transcriptional regulator 0.44 AO353_05680 ribosome association toxin RatA
Pseudomonas sp. RS175 0.27 PFR28_05164 HTH-type transcriptional repressor FabR 0.47 PFR28_00067 Ribosome association toxin RatA
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_08445 TetR family transcriptional regulator 0.48 AO356_07530 ribosome association toxin RatA
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_3568 Unsaturated fatty acid biosythesis repressor FabR, TetR family 0.47 Pf6N2E2_3375 Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W
Pseudomonas simiae WCS417 0.27 PS417_02720 TetR family transcriptional regulator 0.44 PS417_24090 ribosome association toxin RatA
Pseudomonas fluorescens SBW25 0.26 PFLU_RS02790 TetR family transcriptional regulator 0.43 PFLU_RS25930 type II toxin-antitoxin system RatA family toxin
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS02790 TetR family transcriptional regulator 0.43 PFLU_RS25930 type II toxin-antitoxin system RatA family toxin
Paraburkholderia graminis OAS925 0.22 ABIE53_002363 AcrR family transcriptional regulator 0.45 ABIE53_002481 ribosome-associated toxin RatA of RatAB toxin-antitoxin module
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS11410 TetR family transcriptional regulator 0.45 BPHYT_RS12035 cyclase

Not shown: 2 genomes with orthologs for HER17_RS00965 only; 35 genomes with orthologs for HER17_RS17435 only