Conservation of cofitness between HER17_RS20550 and HER17_RS11985 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS20550 fatty acid oxidation complex subunit alpha FadB 1.0 HER17_RS11985 ABC transporter ATP-binding protein 0.63 7
Serratia liquefaciens MT49 0.78 IAI46_01130 fatty acid oxidation complex subunit alpha FadB 0.80 IAI46_08825 ABC transporter ATP-binding protein low > 86
Escherichia coli BW25113 0.75 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 0.74 b0949 uup fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.74 NOLOHH_21830 uup ABC transporter ATP-binding protein low > 75
Escherichia coli ECRC98 0.75 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.74 JDDGAC_08885 uup ABC transporter ATP-binding protein low > 86
Escherichia coli ECRC100 0.75 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.74 OKFHMN_05275 uup ABC transporter ATP-binding protein low > 80
Escherichia coli ECRC99 0.75 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.74 KEDOAH_22460 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC102 0.75 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.74 NIAGMN_02995 uup ABC transporter ATP-binding protein — —
Escherichia coli ECOR38 0.75 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.76 HEPCGN_23245 uup ABC transporter ATP-binding protein low > 87
Escherichia coli ECRC101 0.75 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.74 MCAODC_24665 uup ABC transporter ATP-binding protein low > 87
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.76 EX28DRAFT_1994 ATPase components of ABC transporters with duplicated ATPase domains low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04207 Fatty acid oxidation complex subunit alpha 0.74 OHPLBJKB_02717 ABC transporter ATP-binding protein uup low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF273 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.74 GFF3240 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 78
Enterobacter sp. TBS_079 0.73 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.74 MPMX20_01600 ABC transporter ATP-binding protein uup low > 85
Escherichia coli ECRC62 0.73 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 0.74 BNILDI_19995 uup ABC transporter ATP-binding protein low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS01365 multifunctional fatty acid oxidation complex subunit alpha 0.74 BWI76_RS09930 ABC transporter ATPase low > 92
Escherichia coli BL21 0.73 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.74 ECD_00953 replication regulatory ABC-F family DNA-binding ATPase low > 61
Escherichia fergusonii Becca 0.73 EFB2_04771 Fatty acid oxidation complex subunit alpha 0.75 EFB2_03122 ABC transporter ATP-binding protein uup low > 86
Rahnella sp. WP5 0.73 EX31_RS14565 fatty acid oxidation complex subunit alpha FadB 0.79 EX31_RS18075 ABC transporter ATP-binding protein low > 89
Dickeya dadantii 3937 0.72 DDA3937_RS20250 fatty acid oxidation complex subunit alpha FadB 0.83 DDA3937_RS12835 ABC transporter ATP-binding protein low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS00975 fatty acid oxidation complex subunit alpha FadB 0.84 HGI48_RS12905 ABC transporter ATP-binding protein low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS01035 fatty acid oxidation complex subunit alpha FadB 0.84 DZA65_RS13370 ABC transporter ATP-binding protein low > 75
Pantoea sp. MT58 0.71 IAI47_18230 fatty acid oxidation complex subunit alpha FadB 0.74 IAI47_12685 ABC transporter ATP-binding protein low > 76
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13970 fatty acid oxidation complex subunit alpha FadB 0.61 CSW01_07470 ABC transporter ATP-binding protein low > 62
Shewanella oneidensis MR-1 0.58 SO0021 fadB fatty oxidation complex, alpha subunit (NCBI ptt file) 0.55 SO1853 ABC transporter, ATP-binding protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_0024 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.55 Shewana3_1603 ABC transporter ATPase component (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_0019 fadB multifunctional fatty acid oxidation complex subunit alpha (RefSeq) 0.52 Shew_1814 ABC transporter ATPase component (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_0032 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.53 Sama_1602 ABC transporter ATPase component (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_00575 Fatty acid oxidation complex subunit alpha 0.53 MIT1002_02038 ABC transporter ATP-binding protein uup low > 70
Marinobacter adhaerens HP15 0.54 HP15_1512 Enoyl-CoA hydratase (EC 4.2.1.17) (from data) 0.43 HP15_1508 ABC transporter ATPase component low > 73
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0356 fatty oxidation complex, alpha subunit FadB 0.48 B158DRAFT_1925 ATPase components of ABC transporters with duplicated ATPase domains low > 40
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.43 Psyr_3294 ABC transporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.43 Psyr_3294 ABC transporter 0.28 81
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.45 PFLU_RS07635 ATP-binding cassette domain-containing protein low > 109
Pseudomonas simiae WCS417 0.53 PS417_07575 multifunctional fatty acid oxidation complex subunit alpha 0.45 PS417_07555 ABC transporter ATPase low > 88
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.45 PFLU_RS07635 ATP-binding cassette domain-containing protein low > 109
Pseudomonas sp. RS175 0.52 PFR28_01110 Fatty acid oxidation complex subunit alpha 0.44 PFR28_01107 ABC transporter ATP-binding protein uup low > 88
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.46 Pf1N1B4_3899 COG0488: ATPase components of ABC transporters with duplicated ATPase domains — —
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.44 Pf6N2E2_2293 COG0488: ATPase components of ABC transporters with duplicated ATPase domains — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.45 PfGW456L13_4044 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 87
Pseudomonas stutzeri RCH2 0.52 Psest_2654 fatty oxidation complex, alpha subunit FadB 0.43 Psest_1845 ATPase components of ABC transporters with duplicated ATPase domains — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.44 AO356_02345 ABC transporter ATP-binding protein — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00510 multifunctional fatty acid oxidation complex subunit alpha 0.46 AO353_00525 ABC transporter ATP-binding protein low > 101
Pseudomonas putida KT2440 0.52 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.45 PP_2131 DNA-binding ATPase involved in replication low > 96
Pseudomonas sp. S08-1 0.52 OH686_21925 fatty oxidation complex, alpha subunit FadB 0.42 OH686_21905 Bis-ABC ATPase Uup low > 80
Acinetobacter radioresistens SK82 0.49 MPMX26_00226 Fatty acid oxidation complex subunit alpha 0.44 MPMX26_00361 ABC transporter ATP-binding protein uup 0.64 5
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2109 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.38 GFF1747 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 90
Rhodopseudomonas palustris CGA009 0.24 TX73_019255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.33 TX73_011300 ATP-binding cassette domain-containing protein low > 86
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS12585 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.43 ABZR87_RS09735 ATP-binding cassette domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.43 RPSI07_RS19425 ABC transporter ATP-binding protein low > 81
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS01130 3-hydroxyacyl-CoA dehydrogenase 0.42 RALBFv3_RS14040 ABC transporter ATP-binding protein low > 76
Ralstonia solanacearum UW163 0.22 UW163_RS14440 3-hydroxyacyl-CoA dehydrogenase 0.42 UW163_RS15770 ABC transporter ATP-binding protein — —
Ralstonia solanacearum GMI1000 0.22 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase 0.43 RS_RS04825 ABC transporter ATP-binding protein low > 80

Not shown: 1 genomes with orthologs for HER17_RS20550 only; 33 genomes with orthologs for HER17_RS11985 only