Conservation of cofitness between HER17_RS06010 and HER17_RS05930 in Pectobacterium carotovorum WPP14

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS05930 nitrogen regulatory protein P-II 0.68 14
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.97 DDA3937_RS15635 nitrogen regulatory protein P-II — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.97 DZA65_RS16810 nitrogen regulatory protein P-II low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.97 HGI48_RS15730 nitrogen regulatory protein P-II — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.98 IAI46_19450 nitrogen regulatory protein P-II low > 86
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.97 EX31_RS20610 nitrogen regulatory protein P-II low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 LU632_RS17925 glnB nitrogen regulatory protein P-II low > 74
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.97 IAI47_04950 nitrogen regulatory protein P-II low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.95 GFF2454 Nitrogen regulatory protein P-II 0.76 11
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.95 OHPLBJKB_01154 Nitrogen regulatory protein P-II 1 low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.96 MPMX20_03422 Nitrogen regulatory protein P-II low > 85
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.95 EFB2_01343 Nitrogen regulatory protein P-II 1 low > 86
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 MCAODC_12030 glnB nitrogen regulatory protein P-II low > 87
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 OKFHMN_21500 glnB nitrogen regulatory protein P-II low > 80
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.95 ECD_02445 regulatory protein P-II for glutamine synthetase low > 61
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 JDDGAC_25165 glnB nitrogen regulatory protein P-II low > 86
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.95 b2553 glnB regulatory protein P-II for glutamine synthetase (NCBI) low > 76
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 NIAGMN_19270 glnB nitrogen regulatory protein P-II — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.95 ECOLIN_RS14450 nitrogen regulatory protein P-II — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.96 EX28DRAFT_0097 nitrogen regulatory protein P-II family low > 76
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 HEPCGN_20645 glnB nitrogen regulatory protein P-II low > 87
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 BNILDI_11975 glnB nitrogen regulatory protein P-II 0.78 65
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 NOLOHH_13175 glnB nitrogen regulatory protein P-II low > 75
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.95 KEDOAH_06720 glnB nitrogen regulatory protein P-II — —
Alteromonas macleodii MIT1002 0.70 MIT1002_02802 HTH-type transcriptional regulator IscR 0.81 MIT1002_02726 Nitrogen regulatory protein P-II low > 70
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.95 BWI76_RS21245 nitrogen regulatory protein P-II low > 92
Shewanella loihica PV-4 0.66 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.84 Shew_1110 nitrogen regulatory protein P-II (RefSeq) — —
Shewanella amazonensis SB2B 0.66 Sama_1292 Rrf2 family protein (RefSeq) 0.85 Sama_0935 nitrogen regulatory protein P-II (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_2281 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.85 Shewana3_3124 nitrogen regulatory protein P-II (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO2263 Rrf2 family protein (NCBI ptt file) 0.85 SO3519 glnB-2 nitrogen regulatory protein P-II 1 (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1458 transcriptional regulator, BadM/Rrf2 family 0.84 B158DRAFT_2530 nitrogen regulatory protein P-II family 0.61 18
Acinetobacter radioresistens SK82 0.50 MPMX26_01328 HTH-type transcriptional regulator IscR 0.78 MPMX26_00149 Nitrogen regulatory protein P-II 2 — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS15775 DNA-binding protein 0.71 HSERO_RS00420 nitrogen regulatory protein P-II 1 — —
Dechlorosoma suillum PS 0.48 Dsui_2369 iron-sulfur cluster assembly transcription factor IscR 0.80 Dsui_1687 nitrogen regulatory protein PII low > 51
Castellaniella sp019104865 MT123 0.47 ABCV34_RS05100 Fe-S cluster assembly transcriptional regulator IscR 0.72 ABCV34_RS03065 P-II family nitrogen regulator low > 48
Azospirillum sp. SherDot2 0.44 MPMX19_01654 HTH-type transcriptional regulator IscR 0.76 MPMX19_01554 Nitrogen regulatory protein P-II — —
Rhodospirillum rubrum S1H 0.44 Rru_A2028 Transcriptional Regulator, BadM/Rrf2 family (NCBI) 0.76 Rru_A1130 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS05830 Rrf2 family transcriptional regulator 0.75 AZOBR_RS07100 nitrogen regulatory protein P-II 1 — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS15265 Rrf2 family transcriptional regulator 0.76 AMB_RS03570 P-II family nitrogen regulator — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS04565 Rrf2 family transcriptional regulator 0.76 A4249_RS05675 P-II family nitrogen regulator — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_1633 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.69 Dshi_0143 nitrogen regulatory protein P-II (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c15350 putative transcriptional regulator 0.69 PGA1_c29400 nitrogen regulatory protein P-II — —
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.65 DvMF_0865 nitrogen regulatory protein P-II (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0529 rrf2 Rrf2 protein (voordouw) 0.66 DVU1232 glnB-1 nitrogen regulatory protein P-II (TIGR) low > 55
Sinorhizobium meliloti 1021 0.22 SM_b20994 hypothetical protein 0.74 SMc00947 nitrogen regulatory protein PII — —
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_1470 transcriptional regulator, BadM/Rrf2 family 0.74 Ga0059261_3385 nitrogen regulatory protein P-II family — —
Mycobacterium tuberculosis H37Rv 0.17 Rv1287 Conserved hypothetical protein 0.67 Rv2919c Probable nitrogen regulatory protein P-II GlnB low > 58

Not shown: 16 genomes with orthologs for HER17_RS06010 only; 31 genomes with orthologs for HER17_RS05930 only