Conservation of cofitness between HER17_RS02000 and HER17_RS05545 in Pectobacterium carotovorum WPP14

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02000 two-component system response regulator PmrA 1.0 HER17_RS05545 ABC transporter permease 0.69 2
Dickeya dianthicola 67-19 0.88 HGI48_RS19450 two-component system response regulator PmrA 0.89 HGI48_RS16085 ABC transporter permease low > 71
Dickeya dianthicola ME23 0.88 DZA65_RS20570 two-component system response regulator PmrA 0.89 DZA65_RS17170 ABC transporter permease low > 75
Dickeya dadantii 3937 0.87 DDA3937_RS19350 two-component system response regulator PmrA 0.87 DDA3937_RS15970 ABC transporter permease low > 74
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3235 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.86 EX28DRAFT_3725 ABC-type polysaccharide/polyol phosphate export systems, permease component low > 76
Rahnella sp. WP5 0.67 EX31_RS08605 two-component system response regulator PmrA 0.86 EX31_RS03295 ABC transporter permease low > 89
Enterobacter sp. TBS_079 0.64 MPMX20_04087 Transcriptional regulatory protein BasR 0.87 MPMX20_00822 Inner membrane transport permease YadH low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF1469 Transcriptional regulatory protein basR/pmrA 0.88 GFF100 ABC-type multidrug transport system, permease component low > 78
Escherichia fergusonii Becca 0.64 EFB2_04469 Transcriptional regulatory protein BasR 0.87 EFB2_03917 Inner membrane transport permease YadH low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS23805 two-component system response regulator BasR 0.87 ECOLIN_RS00710 ABC transporter permease low > 55
Escherichia coli ECRC100 0.64 OKFHMN_12570 basR two-component system response regulator BasR 0.87 OKFHMN_10430 yadH Inner membrane transport permease YadH low > 80
Escherichia coli ECOR38 0.64 HEPCGN_11205 basR two-component system response regulator BasR 0.87 HEPCGN_08410 Inner membrane transport permease YadH low > 87
Escherichia coli BW25113 0.64 b4113 basR DNA-binding response regulator in two-component regulatory system with BasS (NCBI) 0.87 b0128 yadH predicted transporter subunit: membrane component of ABC superfamily (NCBI) low > 76
Escherichia coli ECRC62 0.63 BNILDI_06655 basR two-component system response regulator BasR 0.87 BNILDI_08895 yadH Inner membrane transport permease YadH low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03931 Transcriptional regulatory protein BasR 0.87 OHPLBJKB_03533 Inner membrane transport permease YadH low > 73
Escherichia coli ECRC102 0.63 NIAGMN_10415 basR two-component system response regulator BasR 0.87 NIAGMN_08280 yadH Inner membrane transport permease YadH — —
Escherichia coli BL21 0.63 ECD_03984 response regulator in two-component regulatory system with BasS 0.87 ECD_00127 putative ABC transporter permease low > 61
Escherichia coli ECOR27 0.63 NOLOHH_04835 basR two-component system response regulator BasR 0.87 NOLOHH_02775 yadH Inner membrane transport permease YadH low > 75
Escherichia coli ECRC101 0.63 MCAODC_03080 basR two-component system response regulator BasR 0.87 MCAODC_00945 yadH Inner membrane transport permease YadH low > 87
Escherichia coli ECRC98 0.63 JDDGAC_16205 basR two-component system response regulator BasR 0.87 JDDGAC_14025 yadH Inner membrane transport permease YadH low > 86
Escherichia coli ECRC99 0.63 KEDOAH_15595 basR two-component system response regulator BasR 0.87 KEDOAH_17725 yadH Inner membrane transport permease YadH — —
Klebsiella michiganensis M5al 0.62 BWI76_RS08795 DNA-binding response regulator 0.89 BWI76_RS04970 ABC transporter permease low > 92
Erwinia tracheiphila SCR3 0.60 LU632_RS21175 pmrA two-component system response regulator PmrA 0.80 LU632_RS20120 ABC transporter permease low > 74
Pantoea sp. MT58 0.57 IAI47_08260 two-component system response regulator PmrA 0.90 IAI47_15675 ABC transporter permease low > 76
Serratia liquefaciens MT49 0.57 IAI46_01870 two-component system response regulator PmrA 0.92 IAI46_21260 ABC transporter permease low > 86
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS12650 response regulator 0.57 ABZR86_RS16405 ABC transporter permease low > 74
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13215 transcriptional regulator 0.34 RR42_RS18935 metal-dependent hydrolase low > 128
Azospirillum brasilense Sp245 0.42 AZOBR_RS18790 transcriptional regulator 0.36 AZOBR_RS23890 sugar ABC transporter permease low > 97
Alteromonas macleodii MIT1002 0.41 MIT1002_00810 Transcriptional regulatory protein BasR 0.70 MIT1002_03699 Inner membrane transport permease YadH low > 70
Rhodopseudomonas palustris CGA009 0.41 TX73_025035 response regulator transcription factor 0.38 TX73_018180 ABC transporter permease low > 86
Dechlorosoma suillum PS 0.41 Dsui_0266 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.31 Dsui_1405 ABC-type polysaccharide/polyol phosphate export systems, permease component low > 51
Rhizobium sp. OAE497 0.41 ABIE40_RS23395 response regulator 0.36 ABIE40_RS10760 ABC transporter permease low > 107
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1263 Response regulator receiver:Transcriptional regulatory protein, C- terminal 0.29 Ac3H11_4719 ABC-type multidrug transport system, permease component low > 79
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_19595 DNA-binding response regulator 0.75 CSW01_03125 ABC transporter permease low > 62
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_14050 ompR DNA-binding response regulator 0.55 OKGIIK_16615 ABC transporter permease low > 52
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS07960 response regulator transcription factor 0.35 ABZR87_RS02520 ABC transporter permease low > 80
Caulobacter crescentus NA1000 0.39 CCNA_01362 two-component response regulator 0.38 CCNA_03482 ABC transporter permease protein low > 66
Agrobacterium fabrum C58 0.39 Atu5505 two component response regulator 0.39 Atu1906 ABC transporter, membrane spanning protein low > 89
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_01362 two-component response regulator 0.38 CCNA_03482 ABC transporter permease protein low > 67
Marinobacter adhaerens HP15 0.39 HP15_2937 two component transcriptional regulator, winged helix family 0.62 HP15_1462 ABC-type multidrug transport system, permease component low > 73
Rhodanobacter denitrificans MT42 0.39 LRK55_RS07340 response regulator 0.54 LRK55_RS06760 ABC transporter permease low > 63
Magnetospirillum magneticum AMB-1 0.39 AMB_RS16365 DNA-binding response regulator 0.34 AMB_RS01590 multidrug ABC transporter permease low > 64
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS07600 response regulator 0.54 LRK54_RS07020 ABC transporter permease low > 59
Shewanella loihica PV-4 0.38 Shew_0583 two component transcriptional regulator (RefSeq) 0.72 Shew_3140 ABC-2 type transporter (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.36 RS_RS02755 DNA-binding response regulator 0.32 RS_RS14810 ABC transporter permease low > 80
Shewanella amazonensis SB2B 0.36 Sama_3006 response regulator receiver protein (RefSeq) 0.70 Sama_0773 ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq) low > 62
Dinoroseobacter shibae DFL-12 0.32 Dshi_1508 two component transcriptional regulator, winged helix family (RefSeq) 0.41 Dshi_0639 ABC-2 type transporter (RefSeq) low > 64

Not shown: 3 genomes with orthologs for HER17_RS02000 only; 40 genomes with orthologs for HER17_RS05545 only