Conservation of cofitness between HER17_RS05585 and HER17_RS01710 in Pectobacterium carotovorum WPP14

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS05585 DNA/RNA nuclease SfsA 1.0 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.64 8
Serratia liquefaciens MT49 0.75 IAI46_21205 DNA/RNA nuclease SfsA 0.91 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 86
Dickeya dianthicola 67-19 0.72 HGI48_RS16045 DNA/RNA nuclease SfsA 0.93 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS17130 DNA/RNA nuclease SfsA 0.92 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS15930 DNA/RNA nuclease SfsA 0.92 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Rahnella sp. WP5 0.71 EX31_RS03245 DNA/RNA nuclease SfsA 0.86 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Pantoea sp. MT58 0.67 IAI47_15630 DNA/RNA nuclease SfsA 0.80 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.86 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Erwinia tracheiphila SCR3 0.67 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.81 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 74
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.88 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 86
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.88 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.88 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.88 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.88 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 73
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.88 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 80
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.88 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.88 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.88 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.88 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.88 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] low > 61
Escherichia coli Nissle 1917 0.66 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.88 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.87 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.88 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Klebsiella michiganensis M5al 0.65 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.87 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.88 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_03160 DNA/RNA nuclease SfsA 0.80 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) low > 62
Shewanella loihica PV-4 0.56 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.35 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.53 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.36 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) low > 62
Shewanella sp. ANA-3 0.52 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.35 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.51 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.35 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0055 sugar fermentation stimulation protein 0.76 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) low > 40
Marinobacter adhaerens HP15 0.48 HP15_333 sugar fermentation stimulation protein-like protein 0.36 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.32 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.32 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.23 74
Pseudomonas stutzeri RCH2 0.45 Psest_1005 sugar fermentation stimulation protein 0.32 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) low > 67
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.32 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) low > 88
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.31 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 103
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_16105 XRE family transcriptional regulator 0.31 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] low > 104
Pseudomonas sp. S08-1 0.43 OH686_17290 sugar fermentation stimulation protein 0.32 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) low > 80
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.32 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.32 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.33 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.32 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 87
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_14430 XRE family transcriptional regulator 0.32 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] low > 101
Pseudomonas simiae WCS417 0.41 PS417_23865 XRE family transcriptional regulator 0.33 PS417_01210 hypothetical protein low > 88
Alteromonas macleodii MIT1002 0.40 MIT1002_03689 Sugar fermentation stimulation protein A 0.37 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Dinoroseobacter shibae DFL-12 0.37 Dshi_0118 sugar fermentation stimulation protein (RefSeq) 0.39 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.35 PGA1_c29210 sugar fermentation stimulation protein A 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase low > 62
Agrobacterium fabrum C58 0.34 Atu1605 sugar fermentation stimulation protein 0.43 Atu0035 phosphoenolpyruvate carboxykinase low > 89
Sinorhizobium meliloti 1021 0.29 SMc00297 sugar fermentation stimulation protein A 0.42 SMc02562 phosphoenolpyruvate carboxykinase low > 103

Not shown: 10 genomes with orthologs for HER17_RS05585 only; 14 genomes with orthologs for HER17_RS01710 only