Conservation of cofitness between HEPCGN_08095 and HEPCGN_01835 in Escherichia coli ECOR38

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_08095 rnhB ribonuclease HII 1.0 HEPCGN_01835 dps DNA starvation/stationary phase protection protein Dps 0.51 17
Escherichia coli ECRC100 1.00 OKFHMN_10140 rnhB ribonuclease HII 1.00 OKFHMN_06205 dps DNA starvation/stationary phase protection protein Dps low > 80
Escherichia coli ECRC99 1.00 KEDOAH_18015 rnhB ribonuclease HII 1.00 KEDOAH_21705 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC102 1.00 NIAGMN_07990 rnhB ribonuclease HII 1.00 NIAGMN_04250 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC101 1.00 MCAODC_00655 rnhB ribonuclease HII 1.00 MCAODC_25420 dps DNA starvation/stationary phase protection protein Dps low > 87
Escherichia coli ECRC98 1.00 JDDGAC_13735 rnhB ribonuclease HII 1.00 JDDGAC_09840 dps DNA starvation/stationary phase protection protein Dps low > 86
Escherichia fergusonii Becca 1.00 EFB2_03861 Ribonuclease HII 1.00 EFB2_03293 DNA protection during starvation protein low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00995 ribonuclease HII 0.99 ECOLIN_RS04330 DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECOR27 0.99 NOLOHH_02485 rnhB ribonuclease HII 1.00 NOLOHH_22555 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia coli BW25113 0.99 b0183 rnhB ribonuclease HII (NCBI) 1.00 b0812 dps DNA protection during starvation conditions (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_09185 rnhB ribonuclease HII 1.00 BNILDI_20835 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03480 Ribonuclease HII 1.00 OHPLBJKB_02901 DNA protection during starvation protein low > 73
Escherichia coli BL21 0.98 ECD_00181 ribonuclease HII 1.00 ECD_00779 Fe-binding and storage protein; stress-inducible DNA-binding protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF39 Ribonuclease HII (EC 3.1.26.4) 0.97 GFF707 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 78
Enterobacter sp. TBS_079 0.92 MPMX20_00867 Ribonuclease HII 0.96 MPMX20_01442 DNA protection during starvation protein low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3771 RNase HII (EC 3.1.26.4) 0.96 EX28DRAFT_2174 DNA-binding ferritin-like protein (oxidative damage protectant) low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS05285 ribonuclease HII 0.96 BWI76_RS08980 DNA starvation/stationary phase protection protein — —
Serratia liquefaciens MT49 0.83 IAI46_20190 ribonuclease HII 0.81 IAI46_07545 DNA starvation/stationary phase protection protein Dps low > 86
Pantoea sp. MT58 0.81 IAI47_15460 ribonuclease HII 0.84 IAI47_13195 DNA starvation/stationary phase protection protein Dps low > 76
Dickeya dadantii 3937 0.80 DDA3937_RS05185 ribonuclease HII 0.77 DDA3937_RS08815 DNA starvation/stationary phase protection protein Dps low > 74
Pectobacterium carotovorum WPP14 0.80 HER17_RS16265 ribonuclease HII 0.78 HER17_RS13060 DNA starvation/stationary phase protection protein Dps low > 75
Rahnella sp. WP5 0.79 EX31_RS12965 ribonuclease HII 0.81 EX31_RS18915 DNA starvation/stationary phase protection protein Dps low > 89
Dickeya dianthicola 67-19 0.79 HGI48_RS05185 ribonuclease HII 0.76 HGI48_RS08890 DNA starvation/stationary phase protection protein Dps — —
Dickeya dianthicola ME23 0.79 DZA65_RS05525 ribonuclease HII 0.76 DZA65_RS09205 DNA starvation/stationary phase protection protein Dps — —
Erwinia tracheiphila SCR3 0.76 LU632_RS19895 rnhB ribonuclease HII 0.84 LU632_RS09460 dps DNA starvation/stationary phase protection protein Dps — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS06345 ribonuclease HII 0.14 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas fluorescens SBW25 0.67 PFLU_RS06345 ribonuclease HII 0.14 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas simiae WCS417 0.66 PS417_06280 ribonuclease HII 0.15 PS417_22480 ferritin low > 88
Pseudomonas sp. RS175 0.65 PFR28_00410 Ribonuclease HII 0.15 PFR28_03419 DNA protection during starvation protein 2 — —
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1357 RNase HII 0.15 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1357 RNase HII 0.15 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas sp. S08-1 0.63 OH686_06415 Ribonuclease HII 0.15 OH686_19105 DNA protection during starvation protein — —
Shewanella sp. ANA-3 0.60 Shewana3_2801 rnhB ribonuclease HII (RefSeq) 0.15 Shewana3_0985 Ferritin, Dps family protein (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.60 MIT1002_01017 Ribonuclease HII 0.30 MIT1002_01444 DNA protection during starvation protein low > 70
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS10945 ribonuclease HII 0.15 HSERO_RS02145 ferritin low > 78
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS11805 ribonuclease HII 0.16 RR42_RS17370 ferritin — —
Acinetobacter radioresistens SK82 0.53 MPMX26_01083 Ribonuclease HII 0.16 MPMX26_01495 DNA protection during starvation protein 2 low > 36
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS11895 ribonuclease HII 0.15 ABZR87_RS01245 Dps family protein low > 80
Castellaniella sp019104865 MT123 0.52 ABCV34_RS04040 ribonuclease HII 0.16 ABCV34_RS03580 Dps family protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4901 Ribonuclease HII (EC 3.1.26.4) 0.15 GFF2804 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_432 Ribonuclease HII (EC 3.1.26.4) 0.17 Ac3H11_786 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS03320 ribonuclease HII 0.14 LRK54_RS12710 DNA starvation/stationary phase protection protein low > 59
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00383 ribonuclease HII 0.15 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 67
Caulobacter crescentus NA1000 0.45 CCNA_00383 ribonuclease HII 0.15 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 66
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.3570.1 Ribonuclease HII (EC 3.1.26.4) 0.17 Xcc-8004.1478.1 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS06875 ribonuclease HII 0.15 ABIE51_RS05150 Dps family protein low > 62
Agrobacterium fabrum C58 0.40 Atu0720 ribonuclease HII 0.53 Atu2477 DNA oxidation protective protein, not DNA-binding low > 89
Azospirillum sp. SherDot2 0.39 MPMX19_05650 Ribonuclease HII 0.17 MPMX19_02373 DNA protection during starvation protein 2 low > 112
Rhodospirillum rubrum S1H 0.38 Rru_A3209 Ribonuclease H (NCBI) 0.15 Rru_A0333 Ferritin and Dps (NCBI) — —
Dinoroseobacter shibae DFL-12 0.37 Dshi_0023 Ribonuclease H (RefSeq) 0.36 Dshi_3912 Ferritin Dps family protein (RefSeq) low > 64
Azospirillum brasilense Sp245 0.37 AZOBR_RS20300 ribonuclease HII 0.19 AZOBR_RS12945 ferritin — —
Bifidobacterium breve UCC2003 0.16 BBR_RS12455 ribonuclease HII 0.24 BBR_RS10345 DNA starvation/stationary phase protection protein low > 34

Not shown: 37 genomes with orthologs for HEPCGN_08095 only; 0 genomes with orthologs for HEPCGN_01835 only