Conservation of cofitness between GFF39 and GFF72 in Sphingobium sp. HT1-2

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF39 Replication-associated recombination protein RarA 1.0 GFF72 Arginine N-succinyltransferase (EC 2.3.1.109) 0.69 17
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_01342 ATPase, AAA family 0.36 CCNA_00617 arginine N-succinyltransferase, beta chain low > 67
Caulobacter crescentus NA1000 0.60 CCNA_01342 ATPase, AAA family 0.36 CCNA_00617 arginine N-succinyltransferase, beta chain low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS07890 replication-associated recombination protein A 0.30 A4249_RS02850 arginine N-succinyltransferase low > 48
Pseudomonas sp. RS175 0.46 PFR28_02606 Replication-associated recombination protein A 0.30 PFR28_01267 Arginine N-succinyltransferase subunit beta low > 88
Pseudomonas sp. BP01 0.46 JOY50_RS06525 replication-associated recombination protein A 0.29 JOY50_RS00975 aruF arginine/ornithine succinyltransferase subunit alpha low > 84
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_27640 recombination factor protein RarA 0.30 AO353_03015 arginine N-succinyltransferase low > 101
Pseudomonas putida KT2440 0.45 PP_4002 DNA-dependent ATPase required for recombination 0.29 PP_4480 arginine N-succinyltransferase, subunit alpha low > 96
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.29 Pf6N2E2_2181 Arginine N-succinyltransferase (EC 2.3.1.109) 0.33 9
Pseudomonas sp. SVBP6 0.45 COO64_RS24170 replication-associated recombination protein A 0.29 COO64_RS21610 aruF arginine/ornithine succinyltransferase subunit alpha low > 93
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_22185 recombination factor protein RarA 0.30 AO356_01530 arginine N-succinyltransferase low > 104
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_3177 Recombination protein MgsA 0.28 Psyr_3563 arginine succinyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_3177 Recombination protein MgsA 0.28 Psyr_3563 arginine succinyltransferase low > 86
Pseudomonas aeruginosa PA14 0.45 IKLFDK_13115 recombination factor protein RarA 0.32 IKLFDK_03995 arginine N-succinyltransferase low > 100
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.29 Pf1N1B4_3443 Arginine N-succinyltransferase (EC 2.3.1.109) low > 87
Pseudomonas sp. DMC3 0.45 GFF1532 Replication-associated recombination protein A 0.29 GFF4877 Arginine N-succinyltransferase subunit beta low > 89
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.32 B158DRAFT_2220 arginine N-succinyltransferase low > 40
Pseudomonas simiae WCS417 0.45 PS417_16480 recombination factor protein RarA 0.30 PS417_21700 arginine N-succinyltransferase low > 88
Pseudomonas fluorescens SBW25 0.45 PFLU_RS18520 replication-associated recombination protein A 0.30 PFLU_RS23305 arginine N-succinyltransferase low > 109
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.29 PfGW456L13_1973 Arginine N-succinyltransferase (EC 2.3.1.109) low > 87
Pseudomonas lactucae CFBP13502 0.45 GEMAOFIL_03623 Replication-associated recombination protein A 0.30 GEMAOFIL_04483 Arginine N-succinyltransferase subunit beta low > 93
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS18520 replication-associated recombination protein A 0.30 PFLU_RS23305 arginine N-succinyltransferase low > 109
Pseudomonas sp. S08-1 0.45 OH686_00270 Replication-associated recombination protein RarA 0.30 OH686_21300 arginine N-succinyltransferase 0.73 31
Pseudomonas segetis P6 0.45 MPMX49_02534 Replication-associated recombination protein A 0.29 MPMX49_03205 Arginine N-succinyltransferase subunit beta low > 75
Paraburkholderia graminis OAS925 0.44 ABIE53_001292 putative ATPase 0.31 ABIE53_001771 arginine N-succinyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS03415 replication-associated recombination protein A 0.29 QEN71_RS23365 arginine N-succinyltransferase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS05100 ATPase AAA 0.31 BPHYT_RS07705 arginine succinyltransferase low > 109
Shewanella amazonensis SB2B 0.43 Sama_1774 recombination factor protein RarA (RefSeq) 0.32 Sama_3010 Arginine N-succinyltransferase (EC 2.3.1.109) (from data) low > 62
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00180 Recombination protein MgsA 0.30 H281DRAFT_06480 arginine succinyltransferase low > 103
Rahnella sp. WP5 0.42 EX31_RS18515 replication-associated recombination protein A 0.30 EX31_RS17405 arginine N-succinyltransferase low > 89
Klebsiella pneumoniae MKP103 0.42 KDGMDA_17905 replication-associated recombination protein RarA 0.33 KDGMDA_19355 arginine N-succinyltransferase low > 95
Shewanella sp. ANA-3 0.41 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.31 Shewana3_0611 Arginine N-succinyltransferase (EC 2.3.1.109) (from data) low > 73
Enterobacter sp. TBS_079 0.41 MPMX20_01554 Replication-associated recombination protein A 0.33 MPMX20_01866 Arginine N-succinyltransferase low > 85
Shewanella oneidensis MR-1 0.41 SO2308 ATPase, AAA family (NCBI ptt file) 0.32 SO0618 astA arginine N-succinyltransferase (NCBI ptt file) low > 76
Escherichia coli ECRC102 0.41 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.34 NIAGMN_01155 astA arginine N-succinyltransferase low > 80
Escherichia coli ECRC100 0.41 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.34 OKFHMN_26910 astA arginine N-succinyltransferase low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF4896 FIG065221: Holliday junction DNA helicase 0.34 GFF3493 Arginine N-succinyltransferase (EC 2.3.1.109) low > 78
Escherichia coli ECOR38 0.41 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.34 HEPCGN_05275 astA arginine N-succinyltransferase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_02776 Replication-associated recombination protein A 0.34 OHPLBJKB_01985 Arginine N-succinyltransferase low > 74
Escherichia coli BL21 0.41 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.34 ECD_01716 arginine succinyltransferase low > 61
Escherichia coli ECRC101 0.41 MCAODC_24950 rarA replication-associated recombination protein RarA 0.34 MCAODC_18500 astA arginine N-succinyltransferase low > 88
Enterobacter asburiae PDN3 0.41 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.33 EX28DRAFT_1751 arginine N-succinyltransferase low > 76
Escherichia coli ECRC98 0.41 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.34 JDDGAC_01485 astA arginine N-succinyltransferase low > 87
Escherichia coli ECRC99 0.41 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.34 KEDOAH_01200 astA arginine N-succinyltransferase — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS04745 replication-associated recombination protein RarA 0.34 ECOLIN_RS09740 arginine N-succinyltransferase — —
Escherichia fergusonii Becca 0.41 EFB2_03169 Replication-associated recombination protein A 0.34 EFB2_02246 Arginine N-succinyltransferase low > 86
Escherichia coli BW25113 0.41 b0892 ycaJ recombination protein (NCBI) 0.34 b1747 astA arginine succinyltransferase (NCBI) low > 76
Escherichia coli ECRC62 0.41 BNILDI_20385 rarA replication-associated recombination protein RarA 0.34 BNILDI_16210 astA arginine N-succinyltransferase low > 75
Escherichia coli ECOR27 0.41 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.34 NOLOHH_17425 astA arginine N-succinyltransferase low > 76
Shewanella loihica PV-4 0.41 Shew_2022 recombination factor protein RarA (RefSeq) 0.31 Shew_0579 arginine N-succinyltransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.41 IAI46_08570 replication-associated recombination protein A 0.30 IAI46_15330 arginine N-succinyltransferase low > 86
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_05630 replication-associated recombination protein A 0.31 CSW01_13245 arginine N-succinyltransferase low > 62
Marinobacter adhaerens HP15 0.41 HP15_1817 recombination factor protein RarA 0.31 HP15_3040 Arginine N-succinyltransferase (EC 2.3.1.109) (from data) low > 73
Acinetobacter baumannii LAC-4 0.37 RR41_RS00275 replication-associated recombination protein A 0.28 RR41_RS01865 arginine N-succinyltransferase low > 55
Acinetobacter radioresistens SK82 0.36 MPMX26_02987 Replication-associated recombination protein A 0.26 MPMX26_02250 Arginine N-succinyltransferase low > 36

Not shown: 61 genomes with orthologs for GFF39 only; 1 genomes with orthologs for GFF72 only