Conservation of cofitness between GFF5323 and GFF5490 in Variovorax sp. SCN45

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5323 Type IV pilus biogenesis protein PilQ 1.0 GFF5490 Uncharacterized protein with LysM domain, COG1652 1.00 2
Variovorax sp. OAS795 0.83 ABID97_RS23265 type IV pilus secretin PilQ 0.89 ABID97_RS01825 LysM peptidoglycan-binding domain-containing protein 0.99 3
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF1333 Type IV pilus biogenesis protein PilQ 0.54 GFF2572 Uncharacterized protein with LysM domain, COG1652 0.55 41
Acidovorax sp. GW101-3H11 0.59 Ac3H11_4703 Type IV pilus biogenesis protein PilQ 0.55 Ac3H11_4410 Uncharacterized protein with LysM domain, COG1652 low > 79
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS02600 temperature dependent type IV pilus secretin PilQ 0.35 ABZR87_RS04980 LysM peptidoglycan-binding domain-containing protein 0.97 7
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS06945 type IV pilus secretin PilQ 0.36 RALBFv3_RS09760 LysM peptidoglycan-binding domain-containing protein 0.82 7
Ralstonia solanacearum UW163 0.46 UW163_RS06670 type IV pilus secretin PilQ 0.36 UW163_RS03820 LysM peptidoglycan-binding domain-containing protein — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS10290 type IV pilus secretin PilQ 0.36 RPSI07_RS23605 LysM peptidoglycan-binding domain-containing protein 0.87 3
Ralstonia solanacearum GMI1000 0.46 RS_RS14890 type IV pilus secretin PilQ 0.35 RS_RS00345 LysM peptidoglycan-binding domain-containing protein low > 80
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS19015 secretin 0.35 RR42_RS20475 peptidoglycan-binding protein LysM low > 128
Dechlorosoma suillum PS 0.44 Dsui_1191 type IV pilus secretin PilQ/competence protein 0.30 Dsui_0818 LysM domain-containing protein low > 51
Pseudomonas sp. S08-1 0.35 OH686_10025 Type IV pilus biogenesis protein PilQ 0.26 OH686_12510 Uncharacterized protein with LysM domain low > 80
Pseudomonas sp. RS175 0.34 PFR28_05011 Type 3 secretion system secretin 0.26 PFR28_04660 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_12495 fimbrial protein 0.25 AO353_10645 peptidoglycan-binding protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1539 Type IV pilus biogenesis protein PilQ 0.25 Pf1N1B4_1911 Uncharacterized protein with LysM domain, COG1652 low > 87
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3756 Type IV pilus biogenesis protein PilQ 0.25 Pf6N2E2_4124 Uncharacterized protein with LysM domain, COG1652 low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.25 Psyr_0020 Peptidoglycan-binding LysM low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.25 Psyr_0020 Peptidoglycan-binding LysM low > 86
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_09395 fimbrial protein 0.26 AO356_11290 peptidoglycan-binding protein low > 104
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0762 type IV pilus secretin (or competence protein) PilQ 0.26 B158DRAFT_0399 LysM domain. 0.68 6
Pseudomonas stutzeri RCH2 0.32 Psest_3715 type IV pilus secretin (or competence protein) PilQ 0.28 Psest_0024 LysM domain. 0.64 21
Marinobacter adhaerens HP15 0.32 HP15_478 type 4 fimbrial biogenesis protein PilQ 0.28 HP15_3745 protein containing LysM domain low > 73
Acinetobacter radioresistens SK82 0.30 MPMX26_02812 Type 3 secretion system secretin 0.20 MPMX26_00115 hypothetical protein 0.60 28
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_12040 pilQ type IV pilus secretin PilQ 0.19 OKGIIK_13775 xkdP peptidoglycan-binding protein low > 52
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS11790 type IV pilus secretin PilQ 0.18 ABZR86_RS13875 LysM domain-containing protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS11855 type IV pilus secretin PilQ 0.19 LRK54_RS10140 LysM peptidoglycan-binding domain-containing protein 0.51 26
Rhodanobacter denitrificans MT42 0.29 LRK55_RS11580 type IV pilus secretin PilQ 0.19 LRK55_RS09780 LysM domain-containing protein low > 63
Shewanella amazonensis SB2B 0.29 Sama_3369 type IV pilus biogenesis protein PilQ (RefSeq) 0.17 Sama_0044 LysM domain-containing protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.29 SO0285 type IV pilus biogenesis protein PilQ (NCBI ptt file) 0.17 SO0033 LysM domain protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_3895 type IV pilus secretin PilQ (RefSeq) 0.17 Shewana3_0036 peptidoglycan-binding LysM (RefSeq) 0.63 1
Shewanella loihica PV-4 0.28 Shew_0212 type IV pilus secretin PilQ (RefSeq) 0.18 Shew_3735 peptidoglycan-binding LysM (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_13310 type IV pilus secretin PilQ 0.16 CSW01_00240 LysM peptidoglycan-binding domain-containing protein low > 62
Alteromonas macleodii MIT1002 0.24 MIT1002_00449 Type IV pilus biogenesis and competence protein PilQ precursor 0.15 MIT1002_00021 LysM domain/BON superfamily protein low > 70

Not shown: 2 genomes with orthologs for GFF5323 only; 2 genomes with orthologs for GFF5490 only