Conservation of cofitness between GFF831 and GFF540 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF831 Nitrite-sensitive transcriptional repressor NsrR 1.0 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.36 16
Escherichia coli ECRC102 0.82 NIAGMN_10075 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC98 0.82 JDDGAC_15865 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Escherichia coli ECRC99 0.82 KEDOAH_15930 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECOR27 0.82 NOLOHH_04490 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECOR38 0.82 HEPCGN_10455 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.89 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli ECRC100 0.82 OKFHMN_12225 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 80
Escherichia coli Nissle 1917 0.81 ECOLIN_RS24260 nitric oxide-sensing transcriptional repressor NsrR 0.88 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase low > 55
Escherichia coli BW25113 0.81 b4178 yjeB predicted DNA-binding transcriptional regulator (NCBI) 0.88 b3465 yhhF predicted methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.81 EFB2_04357 HTH-type transcriptional repressor NsrR 0.88 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.51 62
Escherichia coli ECRC62 0.81 BNILDI_07000 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECRC101 0.80 MCAODC_02740 nsrR nitric oxide-sensing transcriptional repressor NsrR 0.88 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_03864 HTH-type transcriptional repressor NsrR 0.88 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D low > 73
Escherichia coli BL21 0.80 ECD_04045 nitric oxide-sensitive repressor for NO regulon 0.88 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent low > 61
Klebsiella michiganensis M5al 0.80 BWI76_RS02570 transcriptional regulator 0.82 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3375 transcriptional regulator, BadM/Rrf2 family 0.80 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_00459 HTH-type transcriptional repressor NsrR 0.81 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Dickeya dianthicola ME23 0.76 DZA65_RS18410 nitric oxide-sensing transcriptional repressor NsrR 0.65 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS17320 nitric oxide-sensing transcriptional repressor NsrR 0.66 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.51 55
Pectobacterium carotovorum WPP14 0.75 HER17_RS03830 nitric oxide-sensing transcriptional repressor NsrR 0.71 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Dickeya dadantii 3937 0.75 DDA3937_RS17265 nitric oxide-sensing transcriptional repressor NsrR 0.66 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Serratia liquefaciens MT49 0.73 IAI46_01655 nitric oxide-sensing transcriptional repressor NsrR 0.67 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Rahnella sp. WP5 0.72 EX31_RS08790 nitric oxide-sensing transcriptional repressor NsrR 0.69 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Pantoea sp. MT58 0.65 IAI47_02620 nitric oxide-sensing transcriptional repressor NsrR 0.68 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Shewanella amazonensis SB2B 0.40 Sama_0056 Rrf2 family protein (RefSeq) 0.51 Sama_3469 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.39 Shewana3_0047 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.55 Shewana3_3973 putative methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.39 SO0045 Rrf2 family protein (NCBI ptt file) 0.52 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.39 Shew_3810 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.49 Shew_3607 putative methyltransferase (RefSeq) low > 60
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS09195 Rrf2 family transcriptional regulator 0.28 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Ralstonia solanacearum UW163 0.37 UW163_RS04400 Rrf2 family transcriptional regulator 0.28 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Marinobacter adhaerens HP15 0.37 HP15_2950 transcriptional regulator, BadM/Rrf2 family 0.46 HP15_3491 conserved hypothetical protein low > 73
Ralstonia solanacearum PSI07 0.36 RPSI07_RS08075 Rrf2 family transcriptional regulator 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Ralstonia solanacearum GMI1000 0.36 RS_RS17025 Rrf2 family transcriptional regulator 0.28 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0946 transcriptional regulator, BadM/Rrf2 family 0.42 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) low > 40
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS08985 Rrf2 family transcriptional regulator 0.31 BPHYT_RS02815 methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_00816 transcriptional regulator, BadM/Rrf2 family 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 103
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS04615 Rrf2 family transcriptional regulator 0.27 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS22375 Rrf2 family transcriptional regulator 0.32 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 153
Paraburkholderia graminis OAS925 0.34 ABIE53_002032 Rrf2 family nitric oxide-sensitive transcriptional repressor 0.30 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Magnetospirillum magneticum AMB-1 0.33 AMB_RS06700 Rrf2 family transcriptional regulator 0.24 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 64
Phaeobacter inhibens DSM 17395 0.31 PGA1_c26400 putative HTH-type transcriptional regulator 0.26 PGA1_c29260 ribosomal RNA small subunit methyltransferase D low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS15190 Rrf2 family transcriptional regulator 0.25 ABCV34_RS10145 RsmD family RNA methyltransferase low > 48
Agrobacterium fabrum C58 0.29 Atu0201 hypothetical protein 0.22 Atu0690 hypothetical protein low > 89
Rhizobium sp. OAE497 0.29 ABIE40_RS03340 iron-responsive transcriptional regulator RirA 0.24 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 107
Azospirillum brasilense Sp245 0.22 AZOBR_RS19255 Rrf2 family transcriptional regulator 0.26 AZOBR_RS04500 methyltransferase — —
Azospirillum sp. SherDot2 0.21 MPMX19_04817 HTH-type transcriptional repressor NsrR 0.24 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D — —
Rhodospirillum rubrum S1H 0.20 Rru_A1171 Transcriptional Regulator, BadM/Rrf2 family (NCBI) 0.24 Rru_A0653 hypothetical protein (NCBI) — —
Lysobacter sp. OAE881 0.19 ABIE51_RS15725 SUF system Fe-S cluster assembly regulator 0.37 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Fusobacterium nucleatum SB010 0.15 HUW76_06680 Rrf2 family transcriptional regulator 0.21 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 35

Not shown: 3 genomes with orthologs for GFF831 only; 37 genomes with orthologs for GFF540 only