Conservation of cofitness between PS417_21010 and PS417_27035 in Pseudomonas simiae WCS417

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21010 ribonuclease activity regulator protein RraA 1.0 PS417_27035 FAD-linked oxidase 0.34 15
Pseudomonas fluorescens SBW25 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.99 PFLU_RS28690 FAD-binding oxidoreductase 0.46 81
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.99 PFLU_RS28690 FAD-binding oxidoreductase 0.19 32
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_00850 ribonuclease activity regulator protein RraA 0.97 AO353_08505 FAD-linked oxidase low > 101
Pseudomonas sp. RS175 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.96 PFR28_04841 putative FAD-linked oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_02815 ribonuclease activity regulator protein RraA 0.97 AO356_10305 FAD-linked oxidase low > 104
Pseudomonas putida KT2440 0.93 PP_2084 Putative regulator of ribonuclease activity 0.87 PP_5154 putative Oxidoreductase, FAD-binding low > 96
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.97 Pf6N2E2_3933 D-2-hydroxyglutarate dehydrogenase low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.97 PfGW456L13_944 D-2-hydroxyglutarate dehydrogenase low > 87
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.97 Pf1N1B4_2274 D-2-hydroxyglutarate dehydrogenase low > 87
Pseudomonas sp. S08-1 0.91 OH686_01650 Ribonuclease E inhibitor RraA 0.90 OH686_11285 D-2-hydroxyglutarate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_2315 RraA famliy 0.91 Psest_3872 FAD/FMN-containing dehydrogenases low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2092 Protein of unknown function 1935 0.90 Psyr_4851 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2092 Protein of unknown function 1935 0.90 Psyr_4851 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal low > 86
Marinobacter adhaerens HP15 0.70 HP15_2228 ribonuclease activity regulator protein RraA 0.72 HP15_2553 oxidoreductase, FAD-binding protein — —
Dechlorosoma suillum PS 0.58 Dsui_0010 RraA family protein 0.29 Dsui_2542 FAD/FMN-dependent dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.52 Xcc-8004.2929.1 D-2-hydroxyglutarate dehydrogenase low > 74
Acinetobacter radioresistens SK82 0.55 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.71 MPMX26_02772 putative FAD-linked oxidoreductase low > 36
Escherichia coli ECRC99 0.54 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.12 KEDOAH_07810 ygcU Uncharacterized FAD-linked oxidoreductase YgcU — —
Escherichia coli ECRC62 0.54 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.18 BNILDI_00595 glcD glycolate oxidase subunit GlcD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.18 OHPLBJKB_00727 putative FAD-linked oxidoreductase low > 73
Escherichia coli ECOR38 0.54 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.18 HEPCGN_17995 glcD glycolate oxidase subunit GlcD low > 85
Escherichia coli Nissle 1917 0.54 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.18 ECOLIN_RS17140 glycolate oxidase subunit GlcD low > 52
Escherichia fergusonii Becca 0.54 EFB2_04689 Regulator of ribonuclease activity A 0.18 EFB2_00835 putative FAD-linked oxidoreductase low > 86
Escherichia coli ECRC98 0.54 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.12 JDDGAC_23985 ygcU Uncharacterized FAD-linked oxidoreductase YgcU — —
Escherichia coli ECOR27 0.54 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.18 NOLOHH_10920 glcD glycolate oxidase subunit GlcD 0.56 47
Escherichia coli BW25113 0.54 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.18 b2979 glcD glycolate dehydrogenase, putative FAD-linked subunit (from data) low > 76
Escherichia coli ECRC101 0.54 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.12 OKFHMN_20320 ygcU Uncharacterized FAD-linked oxidoreductase YgcU — —
Escherichia coli ECRC102 0.54 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.12 NIAGMN_18090 ygcU Uncharacterized FAD-linked oxidoreductase YgcU — —
Escherichia coli BL21 0.54 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.18 ECD_02848 glycolate oxidase subunit, FAD-linked low > 60
Escherichia coli ECRC101 0.54 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.12 MCAODC_10845 ygcU Uncharacterized FAD-linked oxidoreductase YgcU — —
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS06240 ribonuclease E activity regulator RraA 0.31 QEN71_RS05170 FAD-binding oxidoreductase low > 153
Azospirillum brasilense Sp245 0.49 AZOBR_RS17130 ribonuclease 0.31 AZOBR_RS29745 2-hydroxyacid dehydrogenase — —
Lysobacter sp. OAE881 0.49 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.51 ABIE51_RS13240 FAD-binding oxidoreductase — —
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS12215 ribonuclease 0.30 RR42_RS06435 2-hydroxyacid dehydrogenase low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.29 RPSI07_RS15590 FAD-binding oxidoreductase low > 81
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS10555 ribonuclease 0.32 HSERO_RS16560 2-hydroxyacid dehydrogenase low > 78
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS00130 ribonuclease 0.29 RALBFv3_RS01900 FAD-binding oxidoreductase low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS13460 ribonuclease 0.29 UW163_RS15210 FAD-binding oxidoreductase — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12315 ribonuclease 0.32 BPHYT_RS13750 D-2-hydroxyacid dehydrogenase — —
Azospirillum sp. SherDot2 0.46 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.31 MPMX19_06983 putative FAD-linked oxidoreductase low > 112
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.31 Ac3H11_2934 D-2-hydroxyglutarate dehydrogenase low > 79
Mycobacterium tuberculosis H37Rv 0.43 Rv3853 Regulator of RNase E activity a RraA 0.22 Rv0161 Possible oxidoreductase low > 58
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.29 ABZR87_RS13840 FAD-binding oxidoreductase low > 80
Ralstonia solanacearum GMI1000 0.43 RS_RS06790 ribonuclease E inhibitor RraA 0.29 RS_RS07835 FAD-binding oxidoreductase low > 80
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.32 GFF3000 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) — —

Not shown: 18 genomes with orthologs for PS417_21010 only; 30 genomes with orthologs for PS417_27035 only