Conservation of cofitness between PS417_16555 and PS417_26370 in Pseudomonas simiae WCS417

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16555 cupin 1.0 PS417_26370 RNA helicase 0.32 11
Pseudomonas fluorescens SBW25 0.98 PFLU_RS18595 cupin domain-containing protein 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS18595 cupin domain-containing protein 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.17 103
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_27720 cupin 0.91 AO353_07850 ATP-dependent RNA helicase 0.49 26
Pseudomonas sp. RS175 0.91 PFR28_02622 50S ribosomal protein L16 3-hydroxylase 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA — —
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_283 FIG002776: hypothetical protein 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_22095 cupin 0.95 AO356_13770 ATP-dependent RNA helicase 0.31 68
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_4045 FIG002776: hypothetical protein 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA — —
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_2636 FIG002776: hypothetical protein 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_3193 Transcription factor jumonji, jmjC 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_3193 Transcription factor jumonji, jmjC 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas putida KT2440 0.84 PP_4017 conserved protein of unknown function 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA — —
Pseudomonas sp. S08-1 0.84 OH686_00190 hypothetical protein 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA — —
Pseudomonas stutzeri RCH2 0.82 Psest_2018 Uncharacterized conserved protein 0.84 Psest_0344 Superfamily II DNA and RNA helicases low > 67
Marinobacter adhaerens HP15 0.47 HP15_2089 cupin 4 family protein 0.59 HP15_1329 DEAD/DEAH box helicase domain protein — —
Lysobacter sp. OAE881 0.41 ABIE51_RS09000 cupin domain-containing protein 0.50 ABIE51_RS14930 ATP-dependent RNA helicase DbpA low > 62
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS05910 cupin domain-containing protein 0.54 ABZR86_RS05195 ATP-dependent RNA helicase DbpA low > 74
Rhodanobacter denitrificans MT42 0.36 LRK55_RS00715 cupin domain-containing protein 0.52 LRK55_RS09695 ATP-dependent RNA helicase DbpA low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS00940 cupin domain-containing protein 0.52 LRK54_RS10055 ATP-dependent RNA helicase DbpA low > 59
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05950 roxA transcription factor 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA low > 52
Acidovorax sp. GW101-3H11 0.32 Ac3H11_282 FIG074102: hypothetical protein 0.56 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA low > 79
Escherichia coli BW25113 0.31 b1128 ycfD orf, hypothetical protein (VIMSS) 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) low > 76
Escherichia coli ECRC62 0.31 BNILDI_19090 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS06500 [50S ribosomal protein L16]-arginine 3-hydroxylase 0.53 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_02540 50S ribosomal protein L16 3-hydroxylase 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 73
Escherichia coli ECOR38 0.31 HEPCGN_24085 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA low > 85
Escherichia coli ECOR27 0.31 NOLOHH_20925 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia fergusonii Becca 0.31 EFB2_02847 50S ribosomal protein L16 3-hydroxylase 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA low > 86
Escherichia coli BL21 0.31 ECD_01126 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA low > 60
Escherichia coli ECRC101 0.31 MCAODC_22450 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC99 0.31 KEDOAH_24720 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC102 0.31 NIAGMN_24760 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC98 0.31 JDDGAC_06730 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC101 0.31 OKFHMN_00635 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA — —
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS06270 cupin 0.58 RR42_RS00295 DEAD/DEAH box helicase 0.34 29
Klebsiella michiganensis M5al 0.30 BWI76_RS11270 50S ribosomal protein L16 arginine hydroxylase 0.53 BWI76_RS12705 ATP-dependent RNA helicase — —
Enterobacter asburiae PDN3 0.30 EX28DRAFT_1802 Uncharacterized conserved protein 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases low > 76
Enterobacter sp. TBS_079 0.30 MPMX20_01809 50S ribosomal protein L16 3-hydroxylase 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA low > 85
Shewanella oneidensis MR-1 0.30 SO2636 conserved hypothetical protein (NCBI ptt file) 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) low > 76
Variovorax sp. OAS795 0.30 ABID97_RS20150 cupin domain-containing protein 0.58 ABID97_RS02340 ATP-dependent RNA helicase DbpA low > 91
Dickeya dadantii 3937 0.30 DDA3937_RS11510 cupin domain-containing protein 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF3413 FIG002776: hypothetical protein 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA low > 78
Dickeya dianthicola 67-19 0.30 HGI48_RS14985 cupin domain-containing protein 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA low > 71
Dickeya dianthicola ME23 0.29 DZA65_RS15735 cupin domain-containing protein 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA low > 75
Erwinia tracheiphila SCR3 0.29 LU632_RS14600 cupin domain-containing protein 0.50 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA low > 74
Shewanella sp. ANA-3 0.29 Shewana3_1744 cupin 4 family protein (RefSeq) 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) low > 73
Shewanella loihica PV-4 0.29 Shew_1557 cupin 4 family protein (RefSeq) 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_2496 Uncharacterized conserved protein 0.50 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) low > 40
Shewanella amazonensis SB2B 0.27 Sama_2065 cupin 4 (RefSeq) 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.26 MIT1002_01824 50S ribosomal protein L16 arginine hydroxylase 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA — —

Not shown: 2 genomes with orthologs for PS417_16555 only; 18 genomes with orthologs for PS417_26370 only