Conservation of cofitness between PS417_21010 and PS417_24765 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21010 ribonuclease activity regulator protein RraA 1.0 PS417_24765 membrane protein 0.35 14
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.97 PFLU_RS26700 LrgB family protein 0.19 31
Pseudomonas fluorescens SBW25 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.97 PFLU_RS26700 LrgB family protein 0.57 28
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_00850 ribonuclease activity regulator protein RraA 0.92 AO353_06515 hypothetical protein low > 101
Pseudomonas sp. RS175 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.87 PFR28_03876 Inner membrane protein YohK low > 88
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_02815 ribonuclease activity regulator protein RraA 0.86 AO356_15270 hypothetical protein low > 104
Pseudomonas putida KT2440 0.93 PP_2084 Putative regulator of ribonuclease activity 0.88 PP_4815 putative Membrane protein low > 96
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.85 Pf6N2E2_4989 LrgA-associated membrane protein LrgB low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.91 PfGW456L13_1351 LrgA-associated membrane protein LrgB low > 87
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.91 Pf1N1B4_2683 LrgA-associated membrane protein LrgB low > 87
Pseudomonas sp. S08-1 0.91 OH686_01650 Ribonuclease E inhibitor RraA 0.70 OH686_09360 LrgA-associated membrane protein LrgB low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_2315 RraA famliy 0.68 Psest_0505 Putative effector of murein hydrolase low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2092 Protein of unknown function 1935 0.79 Psyr_0637 LrgB-like protein low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2092 Protein of unknown function 1935 0.79 Psyr_0637 LrgB-like protein low > 86
Marinobacter adhaerens HP15 0.70 HP15_2228 ribonuclease activity regulator protein RraA 0.36 HP15_2943 LrgB family protein low > 73
Dechlorosoma suillum PS 0.58 Dsui_0010 RraA family protein 0.36 Dsui_0028 putative effector of murein hydrolase low > 51
Acinetobacter radioresistens SK82 0.55 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.19 MPMX26_00599 Holin-like protein CidB low > 36
Escherichia coli ECRC98 0.54 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.28 JDDGAC_27530 yohK CidB/LrgB family autolysis modulator — —
Escherichia fergusonii Becca 0.54 EFB2_04689 Regulator of ribonuclease activity A 0.28 EFB2_01714 Inner membrane protein YohK low > 86
Escherichia coli ECRC101 0.54 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.28 OKFHMN_23575 yohK CidB/LrgB family autolysis modulator — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.28 OHPLBJKB_01569 Inner membrane protein YohK low > 73
Escherichia coli ECRC102 0.54 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.28 NIAGMN_21340 yohK CidB/LrgB family autolysis modulator — —
Escherichia coli ECOR38 0.54 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.28 HEPCGN_22840 yohK CidB/LrgB family autolysis modulator low > 85
Escherichia coli BW25113 0.54 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.28 b2142 yohK predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECRC101 0.54 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.28 MCAODC_14625 yohK CidB/LrgB family autolysis modulator — —
Escherichia coli ECOR27 0.54 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.28 NOLOHH_15145 yohK CidB/LrgB family autolysis modulator low > 57
Escherichia coli Nissle 1917 0.54 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.29 ECOLIN_RS12540 CidB/LrgB family autolysis modulator low > 52
Escherichia coli ECRC99 0.54 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.28 KEDOAH_04610 yohK CidB/LrgB family autolysis modulator — —
Escherichia coli BL21 0.54 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.28 ECD_02071 LrgB family inner membrane protein low > 60
Escherichia coli ECRC62 0.54 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.28 BNILDI_14065 yohK CidB/LrgB family autolysis modulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2311 Ribonuclease E inhibitor RraA 0.26 GFF3796 LrgA-associated membrane protein LrgB low > 78
Erwinia tracheiphila SCR3 0.54 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.28 LU632_RS08560 CidB/LrgB family autolysis modulator low > 74
Klebsiella michiganensis M5al 0.54 BWI76_RS00740 ribonuclease E activity regulator RraA 0.27 BWI76_RS19605 CidB/LrgB family autolysis modulator low > 92
Rahnella sp. WP5 0.54 EX31_RS14255 ribonuclease E activity regulator RraA 0.28 EX31_RS11260 CidB/LrgB family autolysis modulator low > 89
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4402 regulator of ribonuclease activity A 0.26 EX28DRAFT_0413 TIGR00659 family protein low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_04540 Regulator of ribonuclease activity A 0.27 MPMX20_03114 Inner membrane protein YohK low > 85
Serratia liquefaciens MT49 0.54 IAI46_24585 ribonuclease E activity regulator RraA 0.26 IAI46_07945 CidB/LrgB family autolysis modulator low > 86
Pectobacterium carotovorum WPP14 0.54 HER17_RS00840 ribonuclease E activity regulator RraA 0.29 HER17_RS13480 CidB/LrgB family autolysis modulator low > 75
Dickeya dadantii 3937 0.52 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.29 DDA3937_RS08490 CidB/LrgB family autolysis modulator low > 74
Dickeya dianthicola 67-19 0.52 HGI48_RS20470 ribonuclease E activity regulator RraA 0.31 HGI48_RS08655 CidB/LrgB family autolysis modulator low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS21515 ribonuclease E activity regulator RraA 0.31 DZA65_RS08945 CidB/LrgB family autolysis modulator low > 75
Azospirillum brasilense Sp245 0.49 AZOBR_RS17130 ribonuclease 0.36 AZOBR_RS12150 membrane protein — —
Pantoea sp. MT58 0.48 IAI47_00840 ribonuclease E activity regulator RraA 0.28 IAI47_06765 CidB/LrgB family autolysis modulator low > 76
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS12215 ribonuclease 0.31 RR42_RS17325 membrane protein low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.30 RPSI07_RS11790 LrgB family protein low > 81
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS10555 ribonuclease 0.31 HSERO_RS14495 membrane protein low > 78
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS00130 ribonuclease 0.33 RALBFv3_RS05510 LrgB family protein low > 76
Azospirillum sp. SherDot2 0.46 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.33 MPMX19_01820 Inner membrane protein YohK low > 112
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12315 ribonuclease 0.32 BPHYT_RS26565 membrane protein — —
Ralstonia solanacearum UW163 0.46 UW163_RS13460 ribonuclease 0.33 UW163_RS08115 LrgB family protein — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.30 ABZR87_RS01160 LrgB family protein low > 80
Ralstonia solanacearum GMI1000 0.43 RS_RS06790 ribonuclease E inhibitor RraA 0.31 RS_RS13370 LrgB family protein low > 80
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.31 GFF436 LrgA-associated membrane protein LrgB — —

Not shown: 11 genomes with orthologs for PS417_21010 only; 16 genomes with orthologs for PS417_24765 only