Conservation of cofitness between PS417_04290 and PS417_20785 in Pseudomonas simiae WCS417

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04290 hypothetical protein 1.0 PS417_20785 transcriptional regulator 0.37 12
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS04345 ribosome-associated protein 0.99 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr low > 109
Pseudomonas fluorescens SBW25 0.96 PFLU_RS04345 ribosome-associated protein 0.99 PFLU_RS22395 fumarate/nitrate reduction transcriptional regulator Fnr low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein 0.96 PfGW456L13_4071 Fumarate and nitrate reduction regulatory protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1091 FIG138315: Putative alpha helix protein 0.97 Pf1N1B4_3867 Fumarate and nitrate reduction regulatory protein — —
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_07090 hypothetical protein 0.96 AO356_02485 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3279 FIG138315: Putative alpha helix protein 0.96 Pf6N2E2_2323 Fumarate and nitrate reduction regulatory protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_05210 hypothetical protein 0.97 AO353_00660 transcriptional regulator low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4155 Protein of unknown function DUF615 0.92 Psyr_3425 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp — —
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4155 Protein of unknown function DUF615 0.92 Psyr_3425 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp low > 86
Pseudomonas sp. RS175 0.89 PFR28_00162 hypothetical protein 0.97 PFR28_01079 Transcriptional activator protein Anr — —
Pseudomonas sp. S08-1 0.80 OH686_08575 UPF0307 protein YjgA 0.90 OH686_02245 Fumarate and nitrate reduction regulatory protein low > 80
Pseudomonas putida KT2440 0.77 PP_0941 putative ribosome associated protein 0.94 PP_4265 DNA-binding transcriptional dual regulator low > 96
Pseudomonas stutzeri RCH2 0.74 Psest_3319 Uncharacterized protein conserved in bacteria 0.86 Psest_2538 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 67
Pectobacterium carotovorum WPP14 0.36 HER17_RS20095 ribosome-associated protein 0.55 HER17_RS10525 fumarate/nitrate reduction transcriptional regulator Fnr — —
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2073 Uncharacterized protein conserved in bacteria 0.54 B158DRAFT_1982 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 40
Marinobacter adhaerens HP15 0.35 HP15_2448 protein belonging to uncharacterized protein family UPF0307 0.48 HP15_634 transcriptional regulator, Crp/Fnr family low > 73
Serratia liquefaciens MT49 0.34 IAI46_22590 ribosome-associated protein 0.54 IAI46_13260 FNR family transcription factor — —
Enterobacter asburiae PDN3 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria 0.55 EX28DRAFT_1540 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases — —
Dickeya dadantii 3937 0.34 DDA3937_RS01495 ribosome-associated protein 0.55 DDA3937_RS10950 fumarate/nitrate reduction transcriptional regulator Fnr low > 74
Enterobacter sp. TBS_079 0.34 MPMX20_00516 hypothetical protein 0.55 MPMX20_02035 Fumarate and nitrate reduction regulatory protein — —
Dickeya dianthicola ME23 0.32 DZA65_RS01475 ribosome-associated protein 0.55 DZA65_RS11360 fumarate/nitrate reduction transcriptional regulator Fnr — —
Dickeya dianthicola 67-19 0.32 HGI48_RS01410 ribosome-associated protein 0.55 HGI48_RS10900 fumarate/nitrate reduction transcriptional regulator Fnr low > 71
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.1884.1 FIG138315: Putative alpha helix protein 0.24 Xcc-8004.2952.1 transcriptional regulator, Crp/Fnr family — —
Pantoea sp. MT58 0.32 IAI47_02760 ribosome-associated protein 0.54 IAI47_09580 FNR family transcription factor — —
Erwinia tracheiphila SCR3 0.32 LU632_RS02140 ribosome-associated protein 0.54 LU632_RS11420 FNR family transcription factor low > 74
Klebsiella michiganensis M5al 0.32 BWI76_RS02845 hypothetical protein 0.55 BWI76_RS16185 transcriptional regulator FNR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF903 FIG138315: Putative alpha helix protein 0.55 GFF2656 Fumarate and nitrate reduction regulatory protein — —
Escherichia coli ECRC101 0.32 OKFHMN_11930 yjgA ribosome-associated protein 0.54 OKFHMN_02240 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS24565 ribosome biogenesis factor YjgA 0.54 ECOLIN_RS08005 fumarate/nitrate reduction transcriptional regulator Fnr low > 52
Escherichia coli ECRC62 0.32 BNILDI_07320 yjgA ribosome-associated protein 0.54 BNILDI_18090 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03801 hypothetical protein 0.54 OHPLBJKB_02348 Fumarate and nitrate reduction regulatory protein low > 73
Escherichia coli ECRC98 0.32 JDDGAC_15570 yjgA ribosome-associated protein 0.55 JDDGAC_04785 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia fergusonii Becca 0.32 EFB2_04299 hypothetical protein 0.54 EFB2_02593 Fumarate and nitrate reduction regulatory protein low > 86
Escherichia coli ECRC99 0.32 KEDOAH_16225 yjgA ribosome-associated protein 0.54 KEDOAH_26530 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC102 0.32 NIAGMN_09780 yjgA ribosome-associated protein 0.54 NIAGMN_26410 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC101 0.32 MCAODC_02435 yjgA ribosome-associated protein 0.55 MCAODC_16030 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECOR38 0.32 HEPCGN_10130 yjgA ribosome-associated protein 0.54 HEPCGN_25925 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 85
Escherichia coli BW25113 0.32 b4234 yjgA hypothetical protein (NCBI) 0.54 b1334 fnr DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) low > 76
Escherichia coli ECOR27 0.32 NOLOHH_04190 yjgA ribosome-associated protein 0.54 NOLOHH_19940 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 57
Rahnella sp. WP5 0.31 EX31_RS12315 ribosome-associated protein 0.54 EX31_RS07200 FNR family transcription factor low > 89
Lysobacter sp. OAE881 0.30 ABIE51_RS06800 ribosome biogenesis factor YjgA 0.42 ABIE51_RS03805 fumarate/nitrate reduction transcriptional regulator Fnr low > 62
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_10270 DUF615 domain-containing protein 0.39 OKGIIK_00820 CRP-like protein Clp low > 52
Shewanella amazonensis SB2B 0.27 Sama_0481 hypothetical protein (RefSeq) 0.54 Sama_1799 fumarate/nitrate reduction transcriptional regulator (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS03385 DUF615 domain-containing protein 0.39 LRK54_RS14095 cyclic nucleotide-binding domain-containing protein — —
Rhodanobacter denitrificans MT42 0.27 LRK55_RS03135 ribosome biogenesis factor YjgA 0.39 LRK55_RS13815 cyclic nucleotide-binding domain-containing protein — —
Shewanella oneidensis MR-1 0.26 SO4079 conserved hypothetical protein (NCBI ptt file) 0.54 SO2356 etrA electron transport regulator a (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_3632 hypothetical protein (RefSeq) 0.54 Shewana3_2115 fumarate/nitrate reduction transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.24 MIT1002_00229 x96 protein 0.51 MIT1002_02137 Fumarate and nitrate reduction regulatory protein low > 70
Shewanella loihica PV-4 0.20 Shew_0415 hypothetical protein (RefSeq) 0.55 Shew_1993 fumarate/nitrate reduction transcriptional regulator (RefSeq) — —

Not shown: 8 genomes with orthologs for PS417_04290 only; 11 genomes with orthologs for PS417_20785 only