Conservation of cofitness between Psest_1242 and Psest_4096 in Pseudomonas stutzeri RCH2

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 1.0 Psest_4096 Collagenase and related proteases 0.26 14
Pseudomonas sp. S08-1 0.93 OH686_17430 tRNA-guanine transglycosylase 0.77 OH686_13055 Uncharacterized protease YegQ low > 80
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.77 PfGW456L13_2485 Putative protease low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_15790 queuine tRNA-ribosyltransferase 0.77 AO353_19800 protease — —
Pseudomonas sp. RS175 0.92 PFR28_00277 Queuine tRNA-ribosyltransferase 0.76 PFR28_02843 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.77 Pf1N1B4_3925 Putative protease low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06690 queuine tRNA-ribosyltransferase 0.76 AO356_21300 protease low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.77 Pf6N2E2_45 Putative protease low > 103
Pseudomonas fluorescens SBW25 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.75 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.75 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas simiae WCS417 0.90 PS417_23245 queuine tRNA-ribosyltransferase 0.76 PS417_10300 protease — —
Pseudomonas putida KT2440 0.89 PP_0833 queuine tRNA-ribosyltransferase 0.73 PP_2206 putative peptidase low > 96
Marinobacter adhaerens HP15 0.78 HP15_1479 queuine tRNA-ribosyltransferase 0.58 HP15_2983 peptidase, U32 family low > 73
Alteromonas macleodii MIT1002 0.75 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.70 MIT1002_02342 putative protease YhbU precursor low > 70
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.64 B158DRAFT_1722 Collagenase and related proteases low > 40
Serratia liquefaciens MT49 0.74 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.78 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ low > 86
Rahnella sp. WP5 0.73 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.78 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ low > 89
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.78 EX28DRAFT_0478 Collagenase and related proteases low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.78 GFF3846 Putative protease low > 78
Enterobacter sp. TBS_079 0.73 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.78 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase low > 85
Klebsiella michiganensis M5al 0.73 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.81 BWI76_RS19280 U32 family peptidase — —
Shewanella amazonensis SB2B 0.73 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.71 Sama_1004 U32 family peptidase (RefSeq) low > 62
Shewanella sp. ANA-3 0.73 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.73 Shewana3_1068 peptidase U32 (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.73 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.64 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase — —
Dickeya dadantii 3937 0.73 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.78 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.76 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.76 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Shewanella oneidensis MR-1 0.72 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.73 SO1252 peptidase, U32 family (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.72 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.79 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECOR38 0.72 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.78 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 85
Escherichia coli ECRC98 0.72 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC101 0.72 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli BW25113 0.72 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.79 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 57
Escherichia coli ECRC102 0.72 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Shewanella loihica PV-4 0.72 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.72 Shew_2783 peptidase U32 (RefSeq) low > 60
Escherichia coli ECRC99 0.72 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli BL21 0.72 ECD_00354 tRNA-guanine transglycosylase 0.79 ECD_01986 putative peptidase low > 60
Escherichia coli ECRC62 0.72 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.79 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia fergusonii Becca 0.72 EFB2_03651 Queuine tRNA-ribosyltransferase 0.78 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Pectobacterium carotovorum WPP14 0.72 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.78 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.72 17
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.74 CSW01_03750 U32 family peptidase low > 62
Pantoea sp. MT58 0.71 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.76 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ low > 76
Erwinia tracheiphila SCR3 0.70 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.73 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 74
Dechlorosoma suillum PS 0.68 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.57 Dsui_0433 collagenase-like protease low > 51
Acidovorax sp. GW101-3H11 0.60 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.54 Ac3H11_3295 Probable protease (EC 3.4.24.3) low > 79
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.22 DvMF_2645 peptidase U32 (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.24 DVU0654 peptidase, U32 family (TIGR) low > 55
Fusobacterium nucleatum SB010 0.51 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt 0.31 HUW76_02115 U32 family peptidase low > 35

Not shown: 49 genomes with orthologs for Psest_1242 only; 2 genomes with orthologs for Psest_4096 only