Conservation of cofitness between PS417_00900 and PS417_20580 in Pseudomonas simiae WCS417

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_00900 4-aminobutyrate aminotransferase 1.0 PS417_20580 isocitrate dehydrogenase 0.22 13
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.96 PFLU_RS22290 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.96 PFLU_RS22290 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 109
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.89 Pf1N1B4_3387 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 87
Pseudomonas sp. RS175 0.95 PFR28_04756 5-aminovalerate aminotransferase DavT 0.89 PFR28_00738 Isocitrate dehydrogenase kinase/phosphatase 0.43 20
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.88 PfGW456L13_4468 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.89 AO353_18220 isocitrate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_10715 4-aminobutyrate aminotransferase 0.89 AO356_04285 isocitrate dehydrogenase 0.23 71
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.89 Pf6N2E2_2696 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 103
Pseudomonas putida KT2440 0.87 PP_0214 4-aminobutyrate aminotransferase 0.80 PP_4565 Isocitrate dehydrogenase kinase/phosphatase low > 96
Pseudomonas stutzeri RCH2 0.86 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.81 Psest_1857 Isocitrate dehydrogenase kinase/phosphatase low > 67
Pseudomonas sp. S08-1 0.80 OH686_11880 4-aminobutyrate transaminase 0.81 OH686_20595 Isocitrate dehydrogenase phosphatase /kinase low > 80
Escherichia coli ECRC98 0.76 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 JDDGAC_16880 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli ECRC99 0.76 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 KEDOAH_14905 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli ECRC101 0.76 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 OKFHMN_13255 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli ECRC101 0.76 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 MCAODC_03755 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli ECRC102 0.76 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 NIAGMN_11005 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli BW25113 0.76 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 0.42 b4016 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein (NCBI) low > 76
Escherichia fergusonii Becca 0.76 EFB2_01268 4-aminobutyrate aminotransferase GabT 0.42 EFB2_04594 Isocitrate dehydrogenase kinase/phosphatase low > 86
Escherichia coli ECOR38 0.76 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 HEPCGN_11895 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase low > 85
Escherichia coli BL21 0.76 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 0.42 ECD_03888 isocitrate dehydrogenase kinase/phosphatase low > 60
Escherichia coli ECOR27 0.76 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 NOLOHH_05395 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 0.42 OHPLBJKB_04034 Isocitrate dehydrogenase kinase/phosphatase low > 73
Escherichia coli Nissle 1917 0.76 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 0.42 ECOLIN_RS23150 bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Escherichia coli ECRC62 0.75 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.42 BNILDI_06125 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.42 GFF1354 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 78
Variovorax sp. OAS795 0.68 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.36 ABID97_RS25190 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 91
Acidovorax sp. GW101-3H11 0.66 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.37 Ac3H11_2993 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 79
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS26240 4-aminobutyrate aminotransferase 0.37 RR42_RS00875 isocitrate dehydrogenase low > 128
Pectobacterium carotovorum WPP14 0.56 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase 0.44 HER17_RS02300 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 75
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase 0.39 QEN71_RS01135 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 153
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase 0.38 ABZR87_RS06315 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme 0.39 H281DRAFT_02087 isocitrate dehydrogenase kinase/phosphatase low > 103
Enterobacter sp. TBS_079 0.55 MPMX20_04337 4-aminobutyrate aminotransferase PuuE 0.42 MPMX20_00233 Isocitrate dehydrogenase kinase/phosphatase low > 85
Variovorax sp. SCN45 0.55 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.36 GFF1992 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) low > 127
Enterobacter asburiae PDN3 0.55 EX28DRAFT_4294 4-aminobutyrate aminotransferase, prokaryotic type 0.42 EX28DRAFT_4328 Isocitrate dehydrogenase kinase/phosphatase low > 76
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase 0.38 RPSI07_RS22790 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 81
Serratia liquefaciens MT49 0.55 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase 0.45 IAI46_23185 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 86
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS22435 4-aminobutyrate aminotransferase 0.38 BPHYT_RS02240 isocitrate dehydrogenase kinase/phosphatase low > 109
Klebsiella michiganensis M5al 0.54 BWI76_RS26375 aspartate aminotransferase family protein 0.42 BWI76_RS01670 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 92
Dickeya dianthicola ME23 0.54 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase 0.44 DZA65_RS20260 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 75
Ralstonia solanacearum GMI1000 0.54 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.37 RS_RS01365 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 80
Paraburkholderia graminis OAS925 0.54 ABIE53_004117 4-aminobutyrate aminotransferase 0.39 ABIE53_000592 isocitrate dehydrogenase kinase/phosphatase low > 113
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase 0.38 RALBFv3_RS10525 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 76
Ralstonia solanacearum UW163 0.53 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase 0.38 UW163_RS03055 bifunctional isocitrate dehydrogenase kinase/phosphatase — —
Dickeya dianthicola 67-19 0.53 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase 0.43 HGI48_RS19140 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 71
Dickeya dadantii 3937 0.53 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase 0.43 DDA3937_RS19050 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 74
Pantoea sp. MT58 0.52 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase 0.40 IAI47_18000 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 76
Castellaniella sp019104865 MT123 0.52 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase 0.37 ABCV34_RS12365 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 48
Rhodopseudomonas palustris CGA009 0.52 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase 0.20 TX73_001800 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 86
Rahnella sp. WP5 0.51 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase 0.44 EX31_RS11750 bifunctional isocitrate dehydrogenase kinase/phosphatase low > 89

Not shown: 17 genomes with orthologs for PS417_00900 only; 4 genomes with orthologs for PS417_20580 only